y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10003182m |
Family | CBM43 |
Protein Properties | Length: 117 Molecular Weight: 12659.6 Isoelectric Point: 8.1311 |
Chromosome | Chromosome/Scaffold: 6 Start: 12619690 End: 12620040 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 31 | 112 | 3e-30 |
WCIATLTATNAQLQDNINFGCSQGVDCTPIRPGGYCFVPNTLVNHASFVMNAYFQSHGRTKEACSFKNTGTFAGTDPSWGTC |
Full Sequence |
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Protein Sequence Length: 117 Download |
MVKMSSPLTI LFIFLSLIMI NHLHVVSSKQ WCIATLTATN AQLQDNINFG CSQGVDCTPI 60 RPGGYCFVPN TLVNHASFVM NAYFQSHGRT KEACSFKNTG TFAGTDPSWG TCVYGS* 120 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 9.0e-22 | 30 | 101 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 7.0e-37 | 30 | 114 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK28052.1 | 0 | 1 | 116 | 1 | 116 | unknown [Arabidopsis thaliana] |
RefSeq | NP_001078361.1 | 0 | 1 | 116 | 1 | 116 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_001118955.1 | 0 | 1 | 116 | 1 | 116 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_001118956.1 | 0 | 1 | 116 | 1 | 116 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_192648.2 | 0 | 1 | 116 | 1 | 116 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 1e-25 | 27 | 116 | 9 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |