y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10003190m |
Family | CE8 |
Protein Properties | Length: 336 Molecular Weight: 37042.1 Isoelectric Point: 8.968 |
Chromosome | Chromosome/Scaffold: 6 Start: 6391759 End: 6393199 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 34 | 322 | 0 |
VFVDQSGHGNFMTIQKAIDSVPKNNSHWFFINVKAGLYREKIEIPSDKPFIVIMGAGKRLTRVEWDDHYSSAQSPTFSSLANNTVVISITFANTYNLPSK GKMNKNPRRAAVAAFIAGDKSAFYSVGFAGVQDTLWDSDGRHYFHRCTIQGAVDFIFGSGQSIYQSCVIQVLGGQLGPGVRGYITSQGRTNPYDANGFVF IDCLVFGTGMAYLGRPWRGYSRVVFYNSNLTSVVVPEGWNSSNFWRQENQLTFAEYGCFGSGSKTGGRVQWVKKLSGSAVQSLADLSFI |
Full Sequence |
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Protein Sequence Length: 336 Download |
MGTHRIIIGL VALCCFCLPH LIEAKPFGVY QQQVFVDQSG HGNFMTIQKA IDSVPKNNSH 60 WFFINVKAGL YREKIEIPSD KPFIVIMGAG KRLTRVEWDD HYSSAQSPTF SSLANNTVVI 120 SITFANTYNL PSKGKMNKNP RRAAVAAFIA GDKSAFYSVG FAGVQDTLWD SDGRHYFHRC 180 TIQGAVDFIF GSGQSIYQSC VIQVLGGQLG PGVRGYITSQ GRTNPYDANG FVFIDCLVFG 240 TGMAYLGRPW RGYSRVVFYN SNLTSVVVPE GWNSSNFWRQ ENQLTFAEYG CFGSGSKTGG 300 RVQWVKKLSG SAVQSLADLS FINRDGWVED LPIPV* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 2.0e-77 | 39 | 328 | 303 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 7.0e-78 | 36 | 328 | 294 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-81 | 36 | 328 | 293 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 3.0e-97 | 34 | 333 | 301 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 0 | 1 | 333 | 333 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB01354.1 | 0 | 1 | 334 | 1 | 330 | pectin methylesterase-like protein [Arabidopsis thaliana] |
RefSeq | NP_189055.1 | 0 | 1 | 334 | 1 | 334 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_197400.1 | 0 | 1 | 335 | 1 | 330 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002323773.1 | 0 | 34 | 333 | 1 | 289 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 34 | 333 | 48 | 336 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3e-40 | 34 | 334 | 9 | 314 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7e-31 | 36 | 304 | 7 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 1e-17 | 31 | 251 | 30 | 270 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 7e-16 | 29 | 296 | 3 | 311 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 7e-16 | 29 | 296 | 3 | 311 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |