Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10003257m |
Family | CBM43 |
Protein Properties | Length: 492 Molecular Weight: 54099.3 Isoelectric Point: 5.2301 |
Chromosome | Chromosome/Scaffold: 6 Start: 6066776 End: 6068324 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 369 | 454 | 3.4e-24 |
WCMLNPDAHTFSNNTNQLGDNVNYACTFSDCTALGYGSSCGNLDEVGNASYAFNMYFQVHDQKAEACDFEGLAMVTTRNISREQCN | |||
GH17 | 30 | 346 | 0 |
LGVNWGTMATHQLPPKTVVQMMKDNNVKKVKLFDADTNTMVALAGTGIEVMVAIPNDQLKAMGSYNRAKDWVRRNITRFNDDVKIKYVAVGNEPFLTAYN GSFINVTYPALFNIQKALNEAGVGDFIKATVPLNADVYNSPPDNPVPSAGSFRQDIFEEMKLIVNFLAHNKAPFTVNIYPFLSLYLSSDFPFDYAFFDGQ NTVSDNGVIYTNVFDANFDTLLASLRALGHGDMTVIVGEVGWPTDGDKNANIPNAERFYTGLLPKLAGNRGTPMRPGYIQVYLFGFIDEDAKSIAPGNFE RHWGIFKFDGQPKFPAD |
Full Sequence |
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Protein Sequence Length: 492 Download |
MKQITTTAII IVLYITISTV SLNSGDVSAL GVNWGTMATH QLPPKTVVQM MKDNNVKKVK 60 LFDADTNTMV ALAGTGIEVM VAIPNDQLKA MGSYNRAKDW VRRNITRFND DVKIKYVAVG 120 NEPFLTAYNG SFINVTYPAL FNIQKALNEA GVGDFIKATV PLNADVYNSP PDNPVPSAGS 180 FRQDIFEEMK LIVNFLAHNK APFTVNIYPF LSLYLSSDFP FDYAFFDGQN TVSDNGVIYT 240 NVFDANFDTL LASLRALGHG DMTVIVGEVG WPTDGDKNAN IPNAERFYTG LLPKLAGNRG 300 TPMRPGYIQV YLFGFIDEDA KSIAPGNFER HWGIFKFDGQ PKFPADLSGE GQKKILNGAQ 360 NVQYFQNQWC MLNPDAHTFS NNTNQLGDNV NYACTFSDCT ALGYGSSCGN LDEVGNASYA 420 FNMYFQVHDQ KAEACDFEGL AMVTTRNISR EQCNFPIQIG DPTSGHIDHK HRFGSITGAG 480 LMSMLVLFMA L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 1.0e-5 | 222 | 338 | 121 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 7.0e-19 | 368 | 442 | 82 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-30 | 368 | 455 | 90 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-76 | 30 | 346 | 321 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179534.1 | 0 | 27 | 459 | 18 | 448 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_187051.3 | 0 | 4 | 489 | 10 | 490 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_197323.1 | 0 | 2 | 491 | 6 | 488 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002277003.1 | 0 | 27 | 459 | 22 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002525445.1 | 0 | 27 | 476 | 20 | 469 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 30 | 343 | 3 | 310 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 3ur8_A | 0 | 30 | 343 | 3 | 310 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 3ur7_B | 0 | 30 | 343 | 3 | 310 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 30 | 343 | 3 | 310 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 0 | 30 | 343 | 3 | 310 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |