y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10003280m |
Family | GT64 |
Protein Properties | Length: 763 Molecular Weight: 86303.7 Isoelectric Point: 9.2272 |
Chromosome | Chromosome/Scaffold: 6 Start: 1264723 End: 1267426 |
Description | glycosyltransferase family protein 47 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT64 | 515 | 751 | 0 |
FTLATMTYDARLWNLKMYVKRYSRCPSVKEIVVIWNKGPPPELTELDSAVPVRIRVQKQNSLNNRFEIDPLIKTRAVLELDDDIMMPCDDIEKGFRVWRE HPERLVGFYPRFVDHTMTYSAEKFARSHKGYNMILTGAAFMDVRFAFDMYQSDKAKLGREFVDEQFNCEDILLNFLYANASGSGKAVEYVRPSLTTIDTS KFSGVAISGNTNQHYKKRSKCLRRFSDLYGSLADRRW |
Full Sequence |
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Protein Sequence Length: 763 Download |
MMEETTDNAG KSSSLKNVAA SSAHNNHRYR YRSSGKRFIF FASCFGFYAL VALTYAWLAF 60 PPHIGRTDHV SWSSLGCRED NEGSWSIGVF YGDSPFSLKP IESMKVWRNE SGAWPVSNPV 120 LTCASLTNSG LPSNFVADPF LYVQGDTLYL FFETKNPITM QGDIGVAKSI DKGATWIPLG 180 IALDEAWHLS FPFVFNYNGE IYMMPESNEL GQLNLYRALN FPLSWKLEKV IMKKRLVDST 240 IIHHEGIYWL FGSDHSSFGA KKNGQLEIWY SNSPLGPWKP HKKNPIYNGK RSVGARNGGR 300 AFLHDGHLYR VGQDCGENYG KRIRVFKVEV ISKDDYREVE VPFSLEDSHK GKNSWNGLRQ 360 HHFDVKQLSS GEFIGLVDGD RVTSGDLFHR VALGYASLAA AISVVVLLGF LIGVVNCIVP 420 STWCMNYYAG KRTDAFLNLE TAGFFSEKLR RICSRLNRVP PFLRGLVKPN SSMGKFTLGV 480 IVLVGLLLTC VGIRYIYGGS GAVEPYPFKG HLSQFTLATM TYDARLWNLK MYVKRYSRCP 540 SVKEIVVIWN KGPPPELTEL DSAVPVRIRV QKQNSLNNRF EIDPLIKTRA VLELDDDIMM 600 PCDDIEKGFR VWREHPERLV GFYPRFVDHT MTYSAEKFAR SHKGYNMILT GAAFMDVRFA 660 FDMYQSDKAK LGREFVDEQF NCEDILLNFL YANASGSGKA VEYVRPSLTT IDTSKFSGVA 720 ISGNTNQHYK KRSKCLRRFS DLYGSLADRR WEFGGRKDGW DL* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd08978 | GH_F | 0.005 | 105 | 325 | 242 | + Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. GH62 are also predicted to be inverting enzymes. A common structural feature of both, GH43 and GH62 enzymes, is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. | ||
pfam09258 | Glyco_transf_64 | 8.0e-84 | 515 | 754 | 250 | + Glycosyl transferase family 64 domain. Members of this family catalyze the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analog of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate. |
Gene Ontology | |
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GO Term | Description |
GO:0016758 | transferase activity, transferring hexosyl groups |
GO:0031227 | intrinsic to endoplasmic reticulum membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAB85556.1 | 0 | 2 | 762 | 1 | 764 | putative protein [Arabidopsis thaliana] |
RefSeq | NP_196070.2 | 0 | 1 | 762 | 1 | 765 | glycosyltransferase family protein 47 [Arabidopsis thaliana] |
RefSeq | XP_002262646.1 | 0 | 73 | 762 | 69 | 756 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315348.1 | 0 | 145 | 762 | 232 | 847 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532924.1 | 0 | 73 | 762 | 17 | 704 | transferase, transferring glycosyl groups, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1on8_B | 6e-28 | 507 | 746 | 22 | 270 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 1on8_A | 6e-28 | 507 | 746 | 22 | 270 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 1on6_B | 6e-28 | 507 | 746 | 22 | 270 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 1on6_A | 6e-28 | 507 | 746 | 22 | 270 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 1omz_B | 6e-28 | 507 | 746 | 22 | 270 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |