Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10003407m |
Family | CE8 |
Protein Properties | Length: 363 Molecular Weight: 40306.9 Isoelectric Point: 9.3531 |
Chromosome | Chromosome/Scaffold: 6 Start: 2351702 End: 2353179 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 68 | 346 | 0 |
ITVNQKGGGNFKTLNEAIKSIPTGNKNRVIIKLAPGVYNEKVTIDIARPFVTLLGQPGAETVLTYHGTAAKYGTVESATLIIWSEYFQAANLIIRNTAPM PKPGTQGQALAMRINGDKASFYNCRFYGFQDTLCDDRGNHFFKDCYIEGTYDFIFGRGASLYLNTQLHAVGDGLRVITAHGRQNANDQSGYTFAHCKITG TGTGIYLGRSWMSHPKVIYAFTEMTSVVNPSGWRENLNKGYDKTVFYGEYKCFGPGSHVEKRVPYTQDIDQNEVRPFLT |
Full Sequence |
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Protein Sequence Length: 363 Download |
MGYYISMFVV AFLVFFASSV VLATDTDPIP ENRAQISQWF QTNVKPYSQR KGTLDPALDA 60 AEASRRVITV NQKGGGNFKT LNEAIKSIPT GNKNRVIIKL APGVYNEKVT IDIARPFVTL 120 LGQPGAETVL TYHGTAAKYG TVESATLIIW SEYFQAANLI IRNTAPMPKP GTQGQALAMR 180 INGDKASFYN CRFYGFQDTL CDDRGNHFFK DCYIEGTYDF IFGRGASLYL NTQLHAVGDG 240 LRVITAHGRQ NANDQSGYTF AHCKITGTGT GIYLGRSWMS HPKVIYAFTE MTSVVNPSGW 300 RENLNKGYDK TVFYGEYKCF GPGSHVEKRV PYTQDIDQNE VRPFLTLGKI QGSKWLLPPP 360 KY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 8.0e-87 | 56 | 358 | 313 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 3.0e-89 | 66 | 358 | 302 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 4.0e-92 | 67 | 356 | 290 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-104 | 66 | 358 | 302 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 24 | 362 | 341 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAB87930.1 | 0 | 20 | 360 | 1 | 340 | pectin methyl-esterase-like protein [Arabidopsis thaliana] |
RefSeq | NP_177152.2 | 0 | 1 | 360 | 1 | 359 | PPME1; pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_196359.1 | 0 | 25 | 362 | 24 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_196360.1 | 0 | 25 | 362 | 24 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_568181.1 | 0 | 1 | 360 | 1 | 359 | pectinesterase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 8e-38 | 68 | 356 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 8e-38 | 70 | 356 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 4e-21 | 67 | 234 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 4e-21 | 67 | 234 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 5e-21 | 67 | 234 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |