| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10003415m |
| Family | CE8 |
| Protein Properties | Length: 362 Molecular Weight: 39067.8 Isoelectric Point: 8.8197 |
| Chromosome | Chromosome/Scaffold: 6 Start: 2345601 End: 2347077 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 67 | 350 | 0 |
| ITVNPKGGEFKTLTDALKSVPAGNTKRVIIKMAPGEYREKVTIDKNKPFITLMGQPNAMPVISFDGTAAKYGTVDSASLIILSDYFMAVNIVVKNTAPAP DGKTKGAQALSMRISGNMAAFYNCKFYGFQDTVCDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGDGIRVIAAHAGKSAEEKSGYSFVHCKVTG TGGGIYLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRVPFTQDIDATEANRFLSLGYIQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 362 Download |
| MGYTNVSILL GLLVVFVSPV VFADDVTPIP ETKPQVEQWF KTNVAPLAQR KGLDPALVAA 60 EAAPRTITVN PKGGEFKTLT DALKSVPAGN TKRVIIKMAP GEYREKVTID KNKPFITLMG 120 QPNAMPVISF DGTAAKYGTV DSASLIILSD YFMAVNIVVK NTAPAPDGKT KGAQALSMRI 180 SGNMAAFYNC KFYGFQDTVC DDTGNHFFKD CYVEGTFDFI FGSGTSMYLG TQLHVVGDGI 240 RVIAAHAGKS AEEKSGYSFV HCKVTGTGGG IYLGRAWMSH PKVVYAYTEM TSVVNPTGWQ 300 ENKTPAHDKT VFYGEYKCSG PGSHKAKRVP FTQDIDATEA NRFLSLGYIQ GSKWLLPPPA 360 L* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02432 | PLN02432 | 3.0e-82 | 67 | 355 | 290 | + putative pectinesterase |
| PLN02304 | PLN02304 | 8.0e-86 | 66 | 357 | 302 | + probable pectinesterase |
| PLN02634 | PLN02634 | 5.0e-89 | 65 | 360 | 305 | + probable pectinesterase |
| PLN02682 | PLN02682 | 2.0e-101 | 65 | 357 | 302 | + pectinesterase family protein |
| PLN02665 | PLN02665 | 0 | 1 | 361 | 364 | + pectinesterase family protein |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG52566.1 | 0 | 20 | 361 | 1 | 338 | AC010675_14 putative pectin methylesterase; 8433-9798 [Arabidopsis thaliana] |
| GenBank | AAM65347.1 | 0 | 20 | 361 | 1 | 342 | pectin methyl-esterase-like protein [Arabidopsis thaliana] |
| EMBL | CAB87930.1 | 0 | 20 | 361 | 1 | 342 | pectin methyl-esterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_177152.2 | 0 | 1 | 361 | 1 | 361 | PPME1; pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_568181.1 | 0 | 1 | 361 | 1 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 1e-34 | 59 | 355 | 2 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-32 | 74 | 355 | 13 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 6e-18 | 73 | 233 | 15 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 6e-18 | 73 | 233 | 15 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 6e-18 | 73 | 233 | 15 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
