y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10003473m |
Family | GH28 |
Protein Properties | Length: 423 Molecular Weight: 45290.4 Isoelectric Point: 9.4971 |
Chromosome | Chromosome/Scaffold: 6 Start: 5690525 End: 5692320 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 69 | 411 | 0 |
RSRGNTKILVPQGKTFMLKPLAFVGPCKSSSISFMIRGNLVAPGYTWYAGRYPTWINFDSINGLVLTGGGTIDGRGSLWWGKVDNRPSAMHFNNCNGLRI SNLRHLNSPRSHVGLSCSKNIEVSGLRMTAPGNSPNTDGIDISNCQEVNIHASVIATGDDCIAINSGSSRINITGIFCGPGHGISVGSLGLYGDFATVEE VRVKNCTFTNTQNGVRIKTYQNGSGYARKISFDYINMVASENPIIIDQSYHNKGTNGGKRKSSNSYQNCHLAKPRSQHGNSKGVKVSDVRYTRIHGSSAS DQAITLNCDADLGCAGIVMDHVNMISSTSGHKVFASCKNAQGS |
Full Sequence |
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Protein Sequence Length: 423 Download |
MKTSLFFVLL CLFQINKLGF CLEEEAQKAK NGVGSNGFIT VTSFGAIGDG KTDDTKAFLK 60 AWEAVCKGRS RGNTKILVPQ GKTFMLKPLA FVGPCKSSSI SFMIRGNLVA PGYTWYAGRY 120 PTWINFDSIN GLVLTGGGTI DGRGSLWWGK VDNRPSAMHF NNCNGLRISN LRHLNSPRSH 180 VGLSCSKNIE VSGLRMTAPG NSPNTDGIDI SNCQEVNIHA SVIATGDDCI AINSGSSRIN 240 ITGIFCGPGH GISVGSLGLY GDFATVEEVR VKNCTFTNTQ NGVRIKTYQN GSGYARKISF 300 DYINMVASEN PIIIDQSYHN KGTNGGKRKS SNSYQNCHLA KPRSQHGNSK GVKVSDVRYT 360 RIHGSSASDQ AITLNCDADL GCAGIVMDHV NMISSTSGHK VFASCKNAQG SFYASKVSCL 420 KG* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-87 | 39 | 408 | 381 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 2.0e-87 | 1 | 412 | 423 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 2.0e-97 | 3 | 411 | 423 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 2.0e-108 | 41 | 410 | 372 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-108 | 35 | 410 | 378 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 41 | 420 | 32 | 396 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 6 | 420 | 4 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABD28723.1 | 0 | 41 | 420 | 18 | 390 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | NP_197222.1 | 0 | 1 | 421 | 1 | 420 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 41 | 420 | 29 | 394 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-21 | 74 | 320 | 24 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-21 | 74 | 320 | 24 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-21 | 74 | 320 | 24 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-21 | 74 | 320 | 24 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-21 | 74 | 320 | 24 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |