Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10003570m |
Family | GH28 |
Protein Properties | Length: 478 Molecular Weight: 51841.3 Isoelectric Point: 6.6244 |
Chromosome | Chromosome/Scaffold: 6 Start: 15872085 End: 15874053 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 103 | 443 | 0 |
DNNNNTVSILLVPYGFTFMIHSTIFTGPCRSYQYFQVDGTIVPRDGPKSWPSGFNKRQWLVFYRVNGIALKGVGVIDGRGQTWWDLPCKPHRQNVNKTAL AGPCESPAALRFFMSSNVIVESLSIKNSPQVHLKFDGCNVVHINTLRIISPSSSPNTDGIHIENSNSIEIYNSVISNGDDCVSIGTGSYDIDIRNLTCGP GGHGISIGSLGDKNSRACVSNVTVRDSVIKFSDNGVRIKTWQGGSGSVSGVTFDNIHMDAVRNPIIIDQYYCTAKSCANKTSAVFVNDIAYQSIKGTYDI RSPPMHFGCSNNVPCTNLTLSDIELLPSNGETDVDPFCWNA |
Full Sequence |
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Protein Sequence Length: 478 Download |
MLKLSTLSII TTLILITLCL FSYETEARLH HHKDKDNLNP KVEPPCQPPS LSPNPNDPSQ 60 SPSPSYHEVV FNVRNYGAVG DGVTDDTDSF KKAWDSACSN DIDNNNNTVS ILLVPYGFTF 120 MIHSTIFTGP CRSYQYFQVD GTIVPRDGPK SWPSGFNKRQ WLVFYRVNGI ALKGVGVIDG 180 RGQTWWDLPC KPHRQNVNKT ALAGPCESPA ALRFFMSSNV IVESLSIKNS PQVHLKFDGC 240 NVVHINTLRI ISPSSSPNTD GIHIENSNSI EIYNSVISNG DDCVSIGTGS YDIDIRNLTC 300 GPGGHGISIG SLGDKNSRAC VSNVTVRDSV IKFSDNGVRI KTWQGGSGSV SGVTFDNIHM 360 DAVRNPIIID QYYCTAKSCA NKTSAVFVND IAYQSIKGTY DIRSPPMHFG CSNNVPCTNL 420 TLSDIELLPS NGETDVDPFC WNAYGITDEF SKPSISCLKS NPSTSLLGGL SGKCGSS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 3.0e-70 | 71 | 462 | 399 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 7.0e-72 | 71 | 443 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 4.0e-84 | 108 | 427 | 320 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 8.0e-91 | 72 | 427 | 359 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-112 | 68 | 463 | 398 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD22651.1 | 0 | 1 | 476 | 1 | 451 | AC007138_15 putative polygalacturonidase [Arabidopsis thaliana] |
RefSeq | NP_192098.2 | 0 | 1 | 476 | 1 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_563654.1 | 0 | 70 | 477 | 88 | 491 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002320271.1 | 0 | 70 | 458 | 42 | 422 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 66 | 467 | 137 | 530 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-25 | 139 | 434 | 40 | 323 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-25 | 139 | 434 | 40 | 323 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-25 | 139 | 434 | 40 | 323 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-25 | 139 | 434 | 40 | 323 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-25 | 139 | 434 | 40 | 323 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |