| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10003776m |
| Family | CE8 |
| Protein Properties | Length: 363 Molecular Weight: 39833.5 Isoelectric Point: 8.809 |
| Chromosome | Chromosome/Scaffold: 6 Start: 2348638 End: 2350217 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 68 | 351 | 0 |
| ITVNQKGGGDFTTINAAIKSIPLENKKRVIVKLAPGVYKEKVTIDIGRPFVTLLGKPGAETNLTFDGTSAKYGTVESATLIIWAQYFMAANLNLINTSPM PKPGTQGQALAMRINGDKAAFYNCRFYGFQDTLCDDRGNHFFKNCYIEGTYDFIFGRGASLYLNTQLHAVGDGLRVITAHNRQNDNEQNGYSFVHCKITG DGTGIYLGRAWMSHPKVVYAYTEMTSVVNPSGWQENRTPAHDKTVFYGEYMCTGPGSHKAKRVAHTQDIDNKEANHFLSLGYIK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 363 Download |
| MKGYISLSLI AFLVAFATPV VLADDITPIP AEKAQVEPWF KANVKPLSER KGTLDPLLEA 60 AEASPRIITV NQKGGGDFTT INAAIKSIPL ENKKRVIVKL APGVYKEKVT IDIGRPFVTL 120 LGKPGAETNL TFDGTSAKYG TVESATLIIW AQYFMAANLN LINTSPMPKP GTQGQALAMR 180 INGDKAAFYN CRFYGFQDTL CDDRGNHFFK NCYIEGTYDF IFGRGASLYL NTQLHAVGDG 240 LRVITAHNRQ NDNEQNGYSF VHCKITGDGT GIYLGRAWMS HPKVVYAYTE MTSVVNPSGW 300 QENRTPAHDK TVFYGEYMCT GPGSHKAKRV AHTQDIDNKE ANHFLSLGYI KGSSWLLPAP 360 AY* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02634 | PLN02634 | 9.0e-89 | 4 | 361 | 373 | + probable pectinesterase |
| PLN02304 | PLN02304 | 2.0e-89 | 67 | 358 | 302 | + probable pectinesterase |
| PLN02432 | PLN02432 | 2.0e-93 | 67 | 356 | 290 | + putative pectinesterase |
| PLN02682 | PLN02682 | 5.0e-110 | 66 | 358 | 302 | + pectinesterase family protein |
| PLN02665 | PLN02665 | 0 | 1 | 362 | 364 | + pectinesterase family protein |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG52566.1 | 0 | 20 | 361 | 1 | 337 | AC010675_14 putative pectin methylesterase; 8433-9798 [Arabidopsis thaliana] |
| RefSeq | NP_177152.2 | 0 | 3 | 361 | 2 | 360 | PPME1; pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_196359.1 | 0 | 24 | 362 | 23 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_196360.1 | 0 | 25 | 362 | 24 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_568181.1 | 0 | 9 | 361 | 9 | 360 | pectinesterase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 2e-39 | 59 | 356 | 1 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-37 | 70 | 356 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 1e-18 | 58 | 287 | 26 | 276 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 6e-16 | 67 | 287 | 7 | 252 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 6e-16 | 67 | 287 | 7 | 252 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
