| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10003874m |
| Family | CBM49 |
| Protein Properties | Length: 628 Molecular Weight: 69452.2 Isoelectric Point: 9.3169 |
| Chromosome | Chromosome/Scaffold: 6 Start: 13523601 End: 13527347 |
| Description | glycosyl hydrolase 9C3 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM49 | 535 | 612 | 8.4e-39 |
| ITISQKMTSSWKDEGKVYYRYSTRLTNRSTKTLKNLKISITKLYGPIWGVTKTGNSYGFPSWMESLPAGKSMEFVYIH | |||
| GH9 | 27 | 488 | 0 |
| DYKQALSKSILFFEAQRSGHLPPNQRVSWRSHSGLYDGKSSGVDLVGGYYDAGDNVKFGLPMAFTVTTMCWSIIEYGGQLQSNGELGHAMDAVKWGTDYF IKAHPEPNVLYGEVGDGKSDHYCWQRPEEMTTDRRAYKIDRNNPGSDLAGETAAAMAAASIVFRRSDPSYSAELLRHAHQLFEFADKYRGKYDSSITVAQ KFYRSVSGYNDELLWAAAWLYQATNDKYYLDYLGKNGDSMGGTSWSISEFGWDVKYAGVQTLVAKVLMQGKAKEHKAVFERYQEKAEQYMCSLLGKSTKN IKKTPGGLIFRQSWNNMQFVTSASFLAAVYSDYLSSSKRDLRCSQGNVSPSKLLDFSKSQVDYILGDNPRATSYMVGYGNNYPRQVHHRGSSIVSFNVDQ KFVTCRGGYATWYSRKGNDPNVLTGALVGGPDAYDNFADQRDNYEQTEPATYNNAPFLGVLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 628 Download |
| MGSSTTTILV LVLLLLGLVQ LAVSGHDYKQ ALSKSILFFE AQRSGHLPPN QRVSWRSHSG 60 LYDGKSSGVD LVGGYYDAGD NVKFGLPMAF TVTTMCWSII EYGGQLQSNG ELGHAMDAVK 120 WGTDYFIKAH PEPNVLYGEV GDGKSDHYCW QRPEEMTTDR RAYKIDRNNP GSDLAGETAA 180 AMAAASIVFR RSDPSYSAEL LRHAHQLFEF ADKYRGKYDS SITVAQKFYR SVSGYNDELL 240 WAAAWLYQAT NDKYYLDYLG KNGDSMGGTS WSISEFGWDV KYAGVQTLVA KVLMQGKAKE 300 HKAVFERYQE KAEQYMCSLL GKSTKNIKKT PGGLIFRQSW NNMQFVTSAS FLAAVYSDYL 360 SSSKRDLRCS QGNVSPSKLL DFSKSQVDYI LGDNPRATSY MVGYGNNYPR QVHHRGSSIV 420 SFNVDQKFVT CRGGYATWYS RKGNDPNVLT GALVGGPDAY DNFADQRDNY EQTEPATYNN 480 APFLGVLARL ISGPTDFNQQ LPGVSPSPSP VIIKPAPVPK KKPTTPPAAS SSSPITISQK 540 MTSSWKDEGK VYYRYSTRLT NRSTKTLKNL KISITKLYGP IWGVTKTGNS YGFPSWMESL 600 PAGKSMEFVY IHSASPANVL VSSYSLE* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02171 | PLN02171 | 0 | 24 | 627 | 604 | + endoglucanase | ||
| PLN02340 | PLN02340 | 0 | 24 | 624 | 609 | + endoglucanase | ||
| PLN02420 | PLN02420 | 0 | 25 | 491 | 469 | + endoglucanase | ||
| PLN00119 | PLN00119 | 0 | 27 | 490 | 464 | + endoglucanase | ||
| pfam00759 | Glyco_hydro_9 | 0 | 27 | 488 | 464 | + Glycosyl hydrolase family 9. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005576 | extracellular region |
| GO:0005975 | carbohydrate metabolic process |
| GO:0030246 | carbohydrate binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC35539.1 | 0 | 4 | 627 | 3 | 625 | contains similarity to glycosyl hydrolases family 9 (Pfam: glycosyl_hydro5.hmm, score: 88.03) [Arabidopsis thaliana] |
| GenBank | AAN31840.1 | 0 | 21 | 626 | 19 | 619 | putative endo-beta-1,4-glucanase [Arabidopsis thaliana] |
| EMBL | CAC94006.1 | 0 | 25 | 626 | 25 | 619 | endo-beta-1,4-glucanase [Fragaria x ananassa] |
| RefSeq | NP_176621.1 | 0 | 21 | 626 | 19 | 619 | AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds |
| RefSeq | NP_192843.2 | 0 | 4 | 627 | 3 | 626 | AtGH9C3 (Arabidopsis thaliana glycosyl hydrolase 9C3); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ksd_A | 0 | 26 | 492 | 3 | 430 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1ksc_A | 0 | 26 | 492 | 3 | 430 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1ks8_A | 0 | 26 | 492 | 3 | 430 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 2xfg_A | 0 | 22 | 490 | 20 | 459 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| PDB | 4tf4_B | 0 | 27 | 492 | 5 | 442 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
