Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10003877m |
Family | GH28 |
Protein Properties | Length: 441 Molecular Weight: 47015.2 Isoelectric Point: 8.4258 |
Chromosome | Chromosome/Scaffold: 6 Start: 4765733 End: 4767673 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 76 | 410 | 0 |
ACKVAGSTLLVPSGSTFLVGPVSFLGKGCKEKIVFQLDGKIIAPTSSSAWGSGLLQWIEFKTLTGITIKGKGIIDGRGSVWWNKSPAYDPADESESITKK DMALRFYGSNGVTVNGITIQNSPQTHLKFDSCVNIQVSDFTTSSPGDSPNTDGIHLQNSKDAVIYRSTLACGDDCISIQTGCSNIYIHDVDCGPGHGISI GGLGKYNTKACVSNITVRDVTMHETTNGVRIKSWQGGSGSVKQVMFSNIQVSNVANPIIIDQYYCDGGGCHNETSAVAVSNINYINIKGTYTKQPIRFAC SDSLPCTGLSLSNIALKPATDKARSLDPFCWEAHG |
Full Sequence |
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Protein Sequence Length: 441 Download |
MNKLTLKYLS LNFLLLISLL SSRFGTCNAR NSVWKGNRRS IAEGKSSATI NVLNYGAKGD 60 GTSDDTKAFE NAWVEACKVA GSTLLVPSGS TFLVGPVSFL GKGCKEKIVF QLDGKIIAPT 120 SSSAWGSGLL QWIEFKTLTG ITIKGKGIID GRGSVWWNKS PAYDPADESE SITKKDMALR 180 FYGSNGVTVN GITIQNSPQT HLKFDSCVNI QVSDFTTSSP GDSPNTDGIH LQNSKDAVIY 240 RSTLACGDDC ISIQTGCSNI YIHDVDCGPG HGISIGGLGK YNTKACVSNI TVRDVTMHET 300 TNGVRIKSWQ GGSGSVKQVM FSNIQVSNVA NPIIIDQYYC DGGGCHNETS AVAVSNINYI 360 NIKGTYTKQP IRFACSDSLP CTGLSLSNIA LKPATDKARS LDPFCWEAHG EVKTQTLPPI 420 KCLKTKKSPG AASQSNNDAC * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-68 | 51 | 389 | 344 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-70 | 82 | 391 | 311 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 8.0e-71 | 40 | 392 | 365 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 1.0e-77 | 45 | 395 | 355 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-94 | 45 | 419 | 379 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 1 | 440 | 1 | 443 | polygalacturonase PG1 [Glycine max] |
GenBank | AAD46484.1 | 0 | 4 | 424 | 3 | 422 | polygalacturonase PG2 [Glycine max] |
GenBank | ACU24545.1 | 0 | 1 | 440 | 1 | 443 | unknown [Glycine max] |
RefSeq | NP_196969.1 | 0 | 1 | 440 | 1 | 435 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002521450.1 | 0 | 21 | 428 | 22 | 458 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-25 | 81 | 339 | 39 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-23 | 46 | 410 | 17 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 6e-21 | 128 | 391 | 54 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-21 | 128 | 391 | 54 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-21 | 128 | 391 | 54 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |