| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10004306m |
| Family | PL4 |
| Protein Properties | Length: 669 Molecular Weight: 76404 Isoelectric Point: 8.9407 |
| Chromosome | Chromosome/Scaffold: 7 Start: 759576 End: 763209 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 47 | 650 | 0 |
| HGTREVIVDNGIIRVSFSSPEGLVTGIKYKGIDNVLSPHLRARGYWDIMWQGENIRQGGLDRIEGTKFRIITQTEEQVEISFSRTWEGVGSDHIPLNVDK RYIIRANTSGFYTYGIFERLPEWPELEMGLIRIAFKLNPERFHYMVVADDRQREMPTEDDRDINRGHAKALAYKEAVQLTHPHNSMFKNQVDDKYQYTCE IKDNKVHGWISPKSNVGFWIISPSGEYRSGGPIKQELTSHVGPTAISTFISGHYVGADMKTHYETGESWKKVLGPIFIYLNSDEHSTGNDPRHLLWEDAK QQSEKEVKAWPYDFVASSDFPTRQERGTVTGRLLVNDRFLTSGGSAYVGLAPPGEAGSWQTNTKGYQFWTKTDETGYFTIDNVRPGTYNLYGWVPGFIGD FRYQNRVDVAAGSEISLGRVVYEPPRNGPTLWEIGVPDRTAREYFVPEPYKTTMNPYLNHTDKFRQYGLWQRYTELYPNHDLVYTIGASNYSQDWFYAHV TRNTGDLTYAPTTWQIMFQLPYVNWGGSYTLQLALASASRANLQVRINNQNSWPLFSTGNIGKDNAIARHGIHGIYRLYSISVPGRLLKTGTNTIYLRQA KAQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 669 Download |
| MASQKKKKTA SLVFCFLLLF LLPIAFSKPT RNLDGRAPTV QQIKNRHGTR EVIVDNGIIR 60 VSFSSPEGLV TGIKYKGIDN VLSPHLRARG YWDIMWQGEN IRQGGLDRIE GTKFRIITQT 120 EEQVEISFSR TWEGVGSDHI PLNVDKRYII RANTSGFYTY GIFERLPEWP ELEMGLIRIA 180 FKLNPERFHY MVVADDRQRE MPTEDDRDIN RGHAKALAYK EAVQLTHPHN SMFKNQVDDK 240 YQYTCEIKDN KVHGWISPKS NVGFWIISPS GEYRSGGPIK QELTSHVGPT AISTFISGHY 300 VGADMKTHYE TGESWKKVLG PIFIYLNSDE HSTGNDPRHL LWEDAKQQSE KEVKAWPYDF 360 VASSDFPTRQ ERGTVTGRLL VNDRFLTSGG SAYVGLAPPG EAGSWQTNTK GYQFWTKTDE 420 TGYFTIDNVR PGTYNLYGWV PGFIGDFRYQ NRVDVAAGSE ISLGRVVYEP PRNGPTLWEI 480 GVPDRTAREY FVPEPYKTTM NPYLNHTDKF RQYGLWQRYT ELYPNHDLVY TIGASNYSQD 540 WFYAHVTRNT GDLTYAPTTW QIMFQLPYVN WGGSYTLQLA LASASRANLQ VRINNQNSWP 600 LFSTGNIGKD NAIARHGIHG IYRLYSISVP GRLLKTGTNT IYLRQAKAQG PFEGLMYDYI 660 RLEEPSRD* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13620 | CarboxypepD_reg | 0.0005 | 416 | 463 | 48 | + Carboxypeptidase regulatory-like domain. | ||
| cd10316 | RGL4_M | 8.0e-35 | 371 | 464 | 94 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 7.0e-52 | 478 | 663 | 188 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 2.0e-69 | 50 | 329 | 285 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 6.0e-89 | 23 | 237 | 217 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAS99719.1 | 0 | 24 | 667 | 38 | 676 | At2g22620 [Arabidopsis thaliana] |
| DDBJ | BAD94618.1 | 0 | 160 | 667 | 2 | 509 | LG127/30 like gene [Arabidopsis thaliana] |
| EMBL | CAB37543.1 | 0 | 28 | 667 | 26 | 648 | LG127/30 like gene [Arabidopsis thaliana] |
| RefSeq | NP_179847.1 | 0 | 24 | 667 | 38 | 676 | lyase [Arabidopsis thaliana] |
| RefSeq | NP_195516.2 | 0 | 28 | 667 | 26 | 666 | lyase [Arabidopsis thaliana] |
