| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10004408m |
| Family | GH10 |
| Protein Properties | Length: 606 Molecular Weight: 69302.5 Isoelectric Point: 8.4272 |
| Chromosome | Chromosome/Scaffold: 7 Start: 2459233 End: 2462241 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 247 | 507 | 0 |
| TKPSFLLGCGMNFRILESEGYRKWFASRFKITSFTNEMKWYTTEKVRGQENYTLADSMLKFAEENGILVRGHTVLWDNPKMQPSWVPKIEDPNDLMNVTL NRINSVMKRYKGKLTGWDVVNENVHWDYFERRLGANASSSFYKLAFKLDPDVRLFVNEYNTIENHKEVTAAPIRVKEKMEEILAYTGNINIKGAIGAQGH FGPTQPNLAYMRSALDTLGSLGLPVWLTELDMPKCPDQEKYIEEILREAYSHPAVKGIIIF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 606 Download |
| MKNINNGFFL LWCLVSTGMS IDPFSPPYPL SQNRGRKMKM INNGFFFLCI LLLCLVHSGI 60 AFDPFSQSDS LKTECVMKPP RSSETRGLLR FSRSVEDDSD EEWKIDGNRN IREMVHRIHL 120 LQGNIYSFTA WVKLREGNDK KVEVVFRTEN GRLVHGGEVR AKQGCWTLLK GGIVPDVSGP 180 VDIFFESDDK EAKISASDVS LKQFTKEEWK LKQDQLIQKI RKNKVRFEVT YQNKTAVKGA 240 VISLEQTKPS FLLGCGMNFR ILESEGYRKW FASRFKITSF TNEMKWYTTE KVRGQENYTL 300 ADSMLKFAEE NGILVRGHTV LWDNPKMQPS WVPKIEDPND LMNVTLNRIN SVMKRYKGKL 360 TGWDVVNENV HWDYFERRLG ANASSSFYKL AFKLDPDVRL FVNEYNTIEN HKEVTAAPIR 420 VKEKMEEILA YTGNINIKGA IGAQGHFGPT QPNLAYMRSA LDTLGSLGLP VWLTELDMPK 480 CPDQEKYIEE ILREAYSHPA VKGIIIFAGP EVSGFDKLTL ADKDFKNTKT GDVIDKLLKE 540 WQQKSSEIFM TGTENAEEEE EVSLLHGHYN VNVRHPWLKN LSTSFTLEVT KEMGQRQVVK 600 VVINA* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 2.0e-33 | 264 | 478 | 229 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 3.0e-51 | 248 | 504 | 281 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 3.0e-84 | 284 | 534 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA19864.1 | 0 | 77 | 572 | 1 | 513 | putative protein [Arabidopsis thaliana] |
| EMBL | CAB80099.1 | 0 | 77 | 605 | 1 | 546 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_179076.3 | 0 | 38 | 605 | 1 | 570 | endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_195107.1 | 0 | 77 | 605 | 1 | 536 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | NP_680761.1 | 0 | 38 | 605 | 1 | 570 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1tux_A | 8e-29 | 253 | 478 | 27 | 240 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1k6a_A | 3e-27 | 253 | 478 | 27 | 240 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
| PDB | 1gor_A | 4e-27 | 253 | 478 | 27 | 240 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
| PDB | 1goq_A | 4e-27 | 253 | 478 | 27 | 240 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
| PDB | 1goo_A | 4e-27 | 253 | 478 | 27 | 240 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
