| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10004466m |
| Family | AA7 |
| Protein Properties | Length: 573 Molecular Weight: 63813.6 Isoelectric Point: 10.2054 |
| Chromosome | Chromosome/Scaffold: 7 Start: 7751371 End: 7753572 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 78 | 535 | 0 |
| NARFNTSSTPKPTIIVTPRSESHVSAAVICSKSLNFLLKIRSGGHDYDGLSYISDKPFFILDMSNIRDVSVDIAANSAWISAGATLGEVYYRIWEKSRTH GFPAGVCPTVGVGGHLSGGGYGNMLRKFGLSVDHVEDAKIVDVNGRVLDRKAMGEDLFWAITGGGGGSYGVVLGYKVKLVPVPSIVTVFRVEQYMNSGAV DMVSKWQSVAPKTDRNLFMRMLIQPVTRNKVKTVRASVVALFLGRADEVVTLLRKEFPELSLKKENCTEMTWFQSALWWDNRLNATQVDPKVFLDRNLDT SSFGKRKSDYVETAMPKKGIESLFKKMIELGKIGLVFNPYGGKMAEVPVSATPFPHRNKLFKIQYSVNWKENSPAIEKGYLNEARALYSFMTGFVSKNPR SAYLNYRDVDIGVNDHGKNSYKEGEVYGRKYFGVNFDRLVKIKTAVDPGNFFRNEQSI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 573 Download |
| MPFLHKMLTT PLCFFVFFFF LLFLSLPLSS ISQPTSVHNS FLKCFSEKTK SPQSQITDNV 60 FSQSSPAFSS VLRAYIRNAR FNTSSTPKPT IIVTPRSESH VSAAVICSKS LNFLLKIRSG 120 GHDYDGLSYI SDKPFFILDM SNIRDVSVDI AANSAWISAG ATLGEVYYRI WEKSRTHGFP 180 AGVCPTVGVG GHLSGGGYGN MLRKFGLSVD HVEDAKIVDV NGRVLDRKAM GEDLFWAITG 240 GGGGSYGVVL GYKVKLVPVP SIVTVFRVEQ YMNSGAVDMV SKWQSVAPKT DRNLFMRMLI 300 QPVTRNKVKT VRASVVALFL GRADEVVTLL RKEFPELSLK KENCTEMTWF QSALWWDNRL 360 NATQVDPKVF LDRNLDTSSF GKRKSDYVET AMPKKGIESL FKKMIELGKI GLVFNPYGGK 420 MAEVPVSATP FPHRNKLFKI QYSVNWKENS PAIEKGYLNE ARALYSFMTG FVSKNPRSAY 480 LNYRDVDIGV NDHGKNSYKE GEVYGRKYFG VNFDRLVKIK TAVDPGNFFR NEQSIPTLPN 540 AKGTLLPEPG TARRWSRAGR ATLAATVVLH VF* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 1.0e-7 | 70 | 268 | 207 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam08031 | BBE | 6.0e-17 | 479 | 536 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| pfam01565 | FAD_binding_4 | 1.0e-18 | 89 | 226 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_171700.1 | 0 | 35 | 539 | 26 | 535 | ATSEC1A; FAD binding / catalytic/ electron carrier/ oxidoreductase [Arabidopsis thaliana] |
| RefSeq | NP_172642.3 | 0 | 15 | 539 | 4 | 530 | FAD binding / catalytic/ electron carrier/ oxidoreductase [Arabidopsis thaliana] |
| RefSeq | NP_193815.2 | 0 | 33 | 572 | 31 | 570 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_193816.1 | 0 | 37 | 538 | 34 | 535 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_974580.1 | 0 | 33 | 538 | 31 | 536 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 40 | 539 | 6 | 514 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 36 | 538 | 8 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 36 | 538 | 8 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 34 | 538 | 4 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 34 | 538 | 4 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
