| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10004489m |
| Family | GH10 |
| Protein Properties | Length: 561 Molecular Weight: 63036 Isoelectric Point: 5.9319 |
| Chromosome | Chromosome/Scaffold: 7 Start: 202358 End: 205008 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 215 | 474 | 0 |
| SKDFPIGSAISKTILGNIPYQEWFVKRFDATVFENELKWYATEPDQGKLNYTYPDQMMSFVRANRIIARGHNIFWEDPKYTPDWVRNLTGSDLRSAVNQR IRSLMTRYRGEFVHWDVSNEMLHFDFYETRLGKNASYGFFAAAREIDSLATLFLNDFNVVETCSDERSTVDEYIAKVRELQRYDGAQMDGIGLEGHFTTP NVALMRAILDKLATLQLPIWLTEIDISSSLDHRTQGNYLEQVLREGFSHPSVNGIMLWTA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 561 Download |
| MQHSSMCALI FWALSLLAAS TLASSSNDGS FYDSTAYTEC KAEAEKPLYN GGMLKDKEPS 60 VLGRDTLTGV GARYTPAYIL HNLTQNTIYC FSIWVKIESG AASARVRARL RADNTTLNCV 120 GSVSAKHGCW SFLKGGFLLS SPSNLSILIF EASEDDGKMQ LQVASASLQP FTQEQWRNSQ 180 DYFINTERKR AVTIHVSREN GESVEGAAVT VEQISKDFPI GSAISKTILG NIPYQEWFVK 240 RFDATVFENE LKWYATEPDQ GKLNYTYPDQ MMSFVRANRI IARGHNIFWE DPKYTPDWVR 300 NLTGSDLRSA VNQRIRSLMT RYRGEFVHWD VSNEMLHFDF YETRLGKNAS YGFFAAAREI 360 DSLATLFLND FNVVETCSDE RSTVDEYIAK VRELQRYDGA QMDGIGLEGH FTTPNVALMR 420 AILDKLATLQ LPIWLTEIDI SSSLDHRTQG NYLEQVLREG FSHPSVNGIM LWTALHPYGC 480 YEMCLTDDKF RNLPAGDVVD QKLVEWKTGG VKATTDDHGS LTFYGFLGEY SVGIVYQGKS 540 VSTTFSLSRS PETKHVRLQI * 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 6.0e-34 | 213 | 441 | 244 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 5.0e-54 | 212 | 472 | 278 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 3.0e-76 | 251 | 499 | 270 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB37521.1 | 0 | 139 | 560 | 5 | 433 | putative protein [Arabidopsis thaliana] |
| EMBL | CBI37893.1 | 0 | 22 | 560 | 94 | 625 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_195577.2 | 0 | 1 | 560 | 1 | 562 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | XP_002277675.1 | 0 | 28 | 560 | 24 | 549 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002534153.1 | 0 | 90 | 560 | 6 | 473 | Endo-1,4-beta-xylanase A precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 2e-26 | 220 | 499 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1tux_A | 5e-25 | 242 | 503 | 40 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2g4f_B | 7e-24 | 202 | 440 | 2 | 239 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2g4f_A | 7e-24 | 202 | 440 | 2 | 239 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2g3j_A | 7e-24 | 202 | 440 | 2 | 239 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
