| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10004576m |
| Family | AA7 |
| Protein Properties | Length: 529 Molecular Weight: 59995.8 Isoelectric Point: 8.0617 |
| Chromosome | Chromosome/Scaffold: 7 Start: 7757754 End: 7759506 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 76 | 519 | 0 |
| TPKPVLILTPVLPSDVQSGVKCSRRFGIHIRTRSGGHDYEGLSYVTHNKPFVILDLSNLRSITIDVDNRSVWVQTGATIGELYYEIGKKNQTLAFPAGVC PTVGVGGHFSGGGYGTLMRKHGLAADHVIDARMVDARGRILERREMGEDFFWAIRGGGGSSFCVVLSWKIGLVDVPSTVTVFNVTKFSEQSASKIIHRWQ FVSDKISDDLFIRVMLQRYKNMVRASFPGLYLGPVNTLLRLVNREFPELGLEEEDCKEMSWIESVVWFAELGEEPIDVLSKRTRGSLAFKAKSDFVEEPM PETAVSKLWRRLQEPEAELAQLIFTPFGGRMSAVADYETPFPHRKGNIYEIQYLNYWRGEEKEKYMRWVERVYDDMSEFVAKSPRGAYINLRDLDLGMYV GDKRSKYEEGKSWGVKYFKNNFERLVRVKTSVDPSDFFCDEQSI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 529 Download |
| MKLQSFFTCI LIFLLLSILH LVSANRSDQA GFLQCLSLRL NDSNIVSRVI HTPNDTSFSL 60 LLASSIQNPR FSAPHTPKPV LILTPVLPSD VQSGVKCSRR FGIHIRTRSG GHDYEGLSYV 120 THNKPFVILD LSNLRSITID VDNRSVWVQT GATIGELYYE IGKKNQTLAF PAGVCPTVGV 180 GGHFSGGGYG TLMRKHGLAA DHVIDARMVD ARGRILERRE MGEDFFWAIR GGGGSSFCVV 240 LSWKIGLVDV PSTVTVFNVT KFSEQSASKI IHRWQFVSDK ISDDLFIRVM LQRYKNMVRA 300 SFPGLYLGPV NTLLRLVNRE FPELGLEEED CKEMSWIESV VWFAELGEEP IDVLSKRTRG 360 SLAFKAKSDF VEEPMPETAV SKLWRRLQEP EAELAQLIFT PFGGRMSAVA DYETPFPHRK 420 GNIYEIQYLN YWRGEEKEKY MRWVERVYDD MSEFVAKSPR GAYINLRDLD LGMYVGDKRS 480 KYEEGKSWGV KYFKNNFERL VRVKTSVDPS DFFCDEQSIP PFRSVEVI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam08031 | BBE | 5.0e-15 | 462 | 520 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| COG0277 | GlcD | 3.0e-15 | 70 | 522 | 472 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 2.0e-22 | 79 | 217 | 140 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO29955.1 | 0 | 40 | 520 | 1 | 489 | berberine bridge enzyme-like protein [Arabidopsis thaliana] |
| DDBJ | BAE99575.1 | 0 | 22 | 528 | 5 | 513 | berberine bridge enzyme-like protein [Arabidopsis thaliana] |
| RefSeq | NP_193814.1 | 0 | 1 | 528 | 1 | 532 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_199254.1 | 0 | 1 | 528 | 1 | 535 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_199257.1 | 0 | 1 | 520 | 1 | 527 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 31 | 522 | 6 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 32 | 522 | 13 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 32 | 522 | 13 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 32 | 522 | 11 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 32 | 522 | 11 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
