CAZyme Information

Basic Information
SpeciesCapsella rubella
Cazyme IDCarubv10004612m
FamilyGT4
Protein PropertiesLength: 511 Molecular Weight: 57279.5 Isoelectric Point: 8.6964
ChromosomeChromosome/Scaffold: 7 Start: 8222199 End: 8223750
DescriptionUDP-Glycosyltransferase superfamily protein
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GT43254601.4e-23
  NSSAIVLGAAGRLVKDKGHPLLFEAFSKLLETHSNVYLVVAGSGPWEQRYKELGEKVSILGSLNPNELKGFYNGIDLFVNPTLRPQGLDLTLMESMLSGK
  PVMASRYASIKRSIVVNDEFGFMFAPNVEALTAVME
Full Sequence
Protein Sequence     Length: 511     Download
EQTEPTPQHI VKKKQKAMAS QTKLKKPNSH FSLCTFLFFT VLFTIPALFL LRTSSSCSSS    60
TGAVSSSYDT YQPPWSGDLQ TAQFAWNRLA FSLTNPPPKS LKLAVFSRKW PTGPNPGGME    120
RHAFTLYTAL ARRGHRVHVF TSPLDHSPET NIITPVSDQI LYPIIHSHGD AEPGKWRYNK    180
AWELYQEENK KEPFDAVHSE SVALPHWIAR EVPNLAVSWH GIALESLQSS IYQDLIRKPD    240
EPRSQGFNAS LYGAVIPKIL DEIRFFHNYA HHIAISDSCG EMLRDVYQIP EKRVHVILNG    300
VDEHGFTSDK KQRSLFRSKL GLSENSSAIV LGAAGRLVKD KGHPLLFEAF SKLLETHSNV    360
YLVVAGSGPW EQRYKELGEK VSILGSLNPN ELKGFYNGID LFVNPTLRPQ GLDLTLMESM    420
LSGKPVMASR YASIKRSIVV NDEFGFMFAP NVEALTAVME VAVAEGAERL AERGRKCKEY    480
AAEMFTASKM ALAYERLFLC INDQRFCIYP * 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd03807GT1_WbnK_like4.0e-32264498244+
cd03811GT1_WabH_like2.0e-35117487383+
TIGR00032argG2.0e-37114497402+
cd03798GT1_wlbH_like3.0e-42114498403+
cd03801GT1_YqgM_like9.0e-64102498409+
Gene Ontology
GO TermDescription
GO:0009058biosynthetic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankAAM65716.10185101493unknown [Arabidopsis thaliana]
EMBLCAA16923.20184921475putative protein [Arabidopsis thaliana]
RefSeqNP_567589.1015106516glycosyl transferase family 1 protein [Arabidopsis thaliana]
RefSeqXP_002303479.10185091488predicted protein [Populus trichocarpa]
RefSeqXP_002519899.10185102486glycosyltransferase, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3okp_A0.0000003299428170308A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig
PDB3okc_A0.0000003299428170308A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' Bound To Gdp (Orthorhombic Crystal Form)
PDB3oka_B0.0000003299428170308A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form)
PDB3oka_A0.0000003299428170308A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form)
PDB3c4v_B0.0002287448183353A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form)
Transmembrane Domains
StartEnd
2951
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
FY440754291163060
DY017407263162780
BX8362652301734020
BX836265384174530.0000000005
BX836265144034160.0000000005
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_055_00071.1Aquca_004_00554.1
Arabidopsis lyrata316266919149492915
Arabidopsis thalianaAT1G73160.1AT5G59070.1AT4G19460.1
Brachypodium distachyonBradi2g45370.1
Brassica rapaBra012542Bra003857Bra013399Bra020331
Carica papayaevm.model.supercontig_305.3
Capsella rubellaCarubv10021524m
Citrus clementinaCiclev10008126mCiclev10003490m
Citrus sinensisorange1.1g039338morange1.1g044542m
Cucumis sativusCucsa.268510.1
Eucalyptus grandisEucgr.E01172.1Eucgr.F03250.1
Fragaria vescamrna27708.1-v1.0-hybridmrna27178.1-v1.0-hybrid
Glycine maxGlyma09g34990.1Glyma01g35440.1Glyma16g17250.1Glyma16g08210.1
Gossypium raimondiiGorai.009G372800.1Gorai.008G217900.1
Linum usitatissimumLus10032187Lus10014499Lus10033297Lus10034760
Malus domesticaMDP0000252217MDP0000510770MDP0000280727MDP0000690085
Manihot esculentacassava4.1_023608mcassava4.1_022788m
Medicago truncatulaMedtr5g026360.1Medtr8g071900.1
Mimulus guttatusmgv1a005617mmgv1a027119m
Oryza sativaLOC_Os01g46430.1
Panicum virgatumPavirv00039421mPavirv00050283m
Physcomitrella patensPp1s115_97V6.1Pp1s115_97V6.2Pp1s231_59V6.1
Phaseolus vulgarisPhvul.002G124600.1Phvul.003G277200.1
Picea abiesMA_159118g0690MA_58772g0010
Populus trichocarpaPotri.011G097000.1Potri.003G105500.1Potri.001G128300.1
Prunus persicappa004871mppa024212m
Ricinus communis30150.m00047029827.m002616
Setaria italicaSi001150m
Selaginella moellendorffii79637
Sorghum bicolorSb03g029770.1
Thellungiella halophilaThhalv10013459mThhalv10027268mThhalv10019571m
Vitis viniferaGSVIVT01036920001GSVIVT01036921001GSVIVT01036924001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny