Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10004660m |
Family | GH28 |
Protein Properties | Length: 495 Molecular Weight: 54675.8 Isoelectric Point: 6.0223 |
Chromosome | Chromosome/Scaffold: 7 Start: 6616343 End: 6619136 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 99 | 445 | 0 |
YGGSLLFVPAGRWLTGNFNLTSHFTLFLHRDAVILASQEESDYEVIEPLPSYGRGRDTDGGRFISLLFGSNLTDVVITGENGTIDGQGEPWWGKFKRGEL KYTRPYLIEIMHSDGIQISNLTFLNSPSWHIHPVYSRNIFIQGLTILAPVTVPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDQYGIAYGMPTKQL LIRRLTCISPDSAVIALGSEMSGGIEDVRAEDIVAIDSESGIRIKTAIGRGGYVKDVYVRGMTMKTMKYVFWMTGSYGSHPDEHYDPKALPVIQNINYQD MVAENVTMPAQLAGISGDQFTGICISNVTITLSKKPKKVLWNCTDVS |
Full Sequence |
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Protein Sequence Length: 495 Download |
MTTSLSTFAS LLLLLLISHE GGFFGTADAE HDLRATDLHN HRHRRHRGHR RGEEFEYSAI 60 SCRAYSASLD EFGAVGDGVT SNTKAFRDAV SQLSRFEDYG GSLLFVPAGR WLTGNFNLTS 120 HFTLFLHRDA VILASQEESD YEVIEPLPSY GRGRDTDGGR FISLLFGSNL TDVVITGENG 180 TIDGQGEPWW GKFKRGELKY TRPYLIEIMH SDGIQISNLT FLNSPSWHIH PVYSRNIFIQ 240 GLTILAPVTV PNTDGINPDS CTNTRIEDCY IVSGDDCIAV KSGWDQYGIA YGMPTKQLLI 300 RRLTCISPDS AVIALGSEMS GGIEDVRAED IVAIDSESGI RIKTAIGRGG YVKDVYVRGM 360 TMKTMKYVFW MTGSYGSHPD EHYDPKALPV IQNINYQDMV AENVTMPAQL AGISGDQFTG 420 ICISNVTITL SKKPKKVLWN CTDVSGYTSG VTPAPCQLLP EKQPGTVVPC NFPDDPIPID 480 EVKLQRCYSR RRNM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-17 | 71 | 456 | 412 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-22 | 66 | 428 | 376 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 5.0e-25 | 65 | 366 | 310 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-28 | 129 | 456 | 340 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 6.0e-52 | 56 | 363 | 331 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91278.1 | 0 | 1 | 494 | 1 | 494 | glycoside hydrolase family 28 protein [Capsella rubella] |
RefSeq | NP_194081.1 | 0 | 3 | 494 | 2 | 495 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002278930.1 | 0 | 47 | 487 | 33 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 47 | 493 | 33 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 55 | 492 | 41 | 478 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3.00004e-41 | 66 | 432 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3.00004e-41 | 66 | 432 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3.00004e-41 | 66 | 432 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3.00004e-41 | 66 | 432 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000003 | 111 | 402 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |