Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10004724m |
Family | GH28 |
Protein Properties | Length: 476 Molecular Weight: 51949.4 Isoelectric Point: 7.9707 |
Chromosome | Chromosome/Scaffold: 7 Start: 2590742 End: 2594013 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 103 | 448 | 0 |
EGGVQLNVPKGTWLSGSFNLTSNFTLFLEQGAVILGSKDIDEWPIIEPLPSYGRGRERPGGRHISLIHGDNLTNVVITGENGTIDGQGKMWWELWWNRTL VHTRGHLIELKNSHNILISNLTLLNSPFWTIHPVYCSNVVIRNMTILAPMNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGMAVARPSSNI VIRRISGTTRTCSGVGIGSEMSGGIFNITVEDIHVWDSAAGLRIKTDKGRGGYISNIVFNNVLLEKVKVPIRFSSGSNDHSDDKWDPKALPRVKGIYISN VVSLNSRKAPMLLGVEGTLFQDICLRNVTLIGLPQTEKWKCKDVSG |
Full Sequence |
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Protein Sequence Length: 476 Download |
MESEKNPTTV LTAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPASQ YDPPTCSGFF 60 NPDPSPNRIV MSITDFGGVG DGKRSNTAAF RRAVGHLAGF AAEGGVQLNV PKGTWLSGSF 120 NLTSNFTLFL EQGAVILGSK DIDEWPIIEP LPSYGRGRER PGGRHISLIH GDNLTNVVIT 180 GENGTIDGQG KMWWELWWNR TLVHTRGHLI ELKNSHNILI SNLTLLNSPF WTIHPVYCSN 240 VVIRNMTILA PMNAPNTDGI DPDSSTNVCI EDCYIESGDD LVAVKSGWDQ YGMAVARPSS 300 NIVIRRISGT TRTCSGVGIG SEMSGGIFNI TVEDIHVWDS AAGLRIKTDK GRGGYISNIV 360 FNNVLLEKVK VPIRFSSGSN DHSDDKWDPK ALPRVKGIYI SNVVSLNSRK APMLLGVEGT 420 LFQDICLRNV TLIGLPQTEK WKCKDVSGYA SGVFPLSCPQ LLQRKGSISQ CVVHR* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-18 | 72 | 373 | 318 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-22 | 71 | 373 | 325 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 7.0e-26 | 71 | 475 | 445 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-29 | 169 | 446 | 292 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-58 | 70 | 383 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAB38802.1 | 0 | 1 | 471 | 1 | 459 | putative protein [Arabidopsis thaliana] |
EMBL | CAN76963.1 | 0 | 11 | 468 | 1 | 463 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37530.1 | 0 | 1 | 474 | 1 | 479 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_195070.2 | 0 | 1 | 471 | 1 | 472 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002274138.1 | 0 | 1 | 474 | 1 | 479 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9.80909e-45 | 66 | 434 | 24 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9.80909e-45 | 66 | 434 | 24 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9.80909e-45 | 66 | 434 | 24 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9.80909e-45 | 66 | 434 | 24 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-26 | 115 | 447 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |