Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10004799m |
Family | GH28 |
Protein Properties | Length: 449 Molecular Weight: 48436 Isoelectric Point: 8.6225 |
Chromosome | Chromosome/Scaffold: 7 Start: 15288914 End: 15291933 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 419 | 0 |
NSIDGTLLYVPRGVYLSQSFNLTSHMTLYLADGAVIKAVQDTEKWPLTDPLPSYGRGRERPGRRYISFIHGDGLNDVVITGKNGTIDGQGEPWWNMYRSG TLKFTRPGLVEFKNSTNIVISHVVLQNSPFWTLHPVYCSGVVVHHVTILAPTDSYNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYNRPSR DITIRRITGSSPFAGIAIGSETSGGIQNITVENITLYNSGIGIHIKTNIGRGGSIQGITISGVYLEKVRTGIKISGDTGNHPDDNFNPTALPIVRGITIK NVWGIKVERAGMVQGLKDSPFTNLCFSNVTLTGTKSSPIWKCSYV |
Full Sequence |
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Protein Sequence Length: 449 Download |
MRVSRAPISL SLLFFLSAVL NHHLLLGAPI TCSGIVPMKH RTKMLSVSDF GAVGDGKTLN 60 TKAFNAAIDR IRNSNSIDGT LLYVPRGVYL SQSFNLTSHM TLYLADGAVI KAVQDTEKWP 120 LTDPLPSYGR GRERPGRRYI SFIHGDGLND VVITGKNGTI DGQGEPWWNM YRSGTLKFTR 180 PGLVEFKNST NIVISHVVLQ NSPFWTLHPV YCSGVVVHHV TILAPTDSYN TDGIDPDSSS 240 NVCIEDSYIS TGDDLVAVKS GWDEYGIAYN RPSRDITIRR ITGSSPFAGI AIGSETSGGI 300 QNITVENITL YNSGIGIHIK TNIGRGGSIQ GITISGVYLE KVRTGIKISG DTGNHPDDNF 360 NPTALPIVRG ITIKNVWGIK VERAGMVQGL KDSPFTNLCF SNVTLTGTKS SPIWKCSYVV 420 GAANKVNPTP CPELTATTQQ GGSCENQF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 9.0e-21 | 34 | 321 | 300 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 3.0e-25 | 42 | 357 | 327 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 5.0e-27 | 45 | 411 | 385 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-32 | 142 | 419 | 284 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 5.0e-58 | 45 | 356 | 335 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 8 | 437 | 4 | 434 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 3 | 446 | 1 | 445 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 8 | 448 | 4 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_199002.1 | 0 | 1 | 447 | 1 | 448 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002509949.1 | 0 | 31 | 447 | 28 | 445 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-37 | 43 | 411 | 26 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-37 | 43 | 411 | 26 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-37 | 43 | 411 | 26 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-37 | 43 | 411 | 26 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 4e-21 | 88 | 348 | 51 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |