Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10004811m |
Family | GH28 |
Protein Properties | Length: 445 Molecular Weight: 48520.2 Isoelectric Point: 8.8169 |
Chromosome | Chromosome/Scaffold: 7 Start: 6448684 End: 6452963 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 416 | 0 |
RRGGTLLYIPPGVYLTESFNLTSHMTLYLARGAVIKAVQDTWNWPLIDHLPSYGRGRELPGGRYMSLIHGDGLRDVVITGQNGTIDGQGEVWWNLWRSRT LKYTRPNLIEFKNSKEIIISNVIFQNSPFWNIHPVYCSEVVIHHVTILAPQDSPNTDGIDPDSSVNVCIEDSYISTGDDLVAIKSGWDQYGIAYGRPSSN ITIRRITGSSPFAGIAIGSETSGGIKNIVAEHITLSNMGVGVNIKTNIGRGGYIKNIRISNVYVDTAKYGIKIAGDTGDHPDANYNPNALPVVEGIHIKN VWGVNVRKAGSIQGLKGSPFTGICLSEINLHGSLNMYRTWKCADV |
Full Sequence |
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Protein Sequence Length: 445 Download |
MWRLSASILL FSCLVLSSSS FGDSEVTCSG IVPLRYRNDK ISITDFGGVG DGRTVNTKAF 60 RAAMYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL ARGAVIKAVQ DTWNWPLIDH 120 LPSYGRGREL PGGRYMSLIH GDGLRDVVIT GQNGTIDGQG EVWWNLWRSR TLKYTRPNLI 180 EFKNSKEIII SNVIFQNSPF WNIHPVYCSE VVIHHVTILA PQDSPNTDGI DPDSSVNVCI 240 EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNIV 300 AEHITLSNMG VGVNIKTNIG RGGYIKNIRI SNVYVDTAKY GIKIAGDTGD HPDANYNPNA 360 LPVVEGIHIK NVWGVNVRKA GSIQGLKGSP FTGICLSEIN LHGSLNMYRT WKCADVIGTS 420 MKVSPWPCSE LRTSGGSNVC SSAF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 7.0e-23 | 35 | 428 | 413 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-24 | 38 | 344 | 316 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 4.0e-30 | 41 | 403 | 375 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-33 | 139 | 416 | 284 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-51 | 42 | 328 | 311 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 1 | 444 | 1 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 4 | 442 | 12 | 445 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 1 | 444 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 34 | 444 | 1 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 11 | 441 | 13 | 443 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 5.60519e-45 | 40 | 404 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5.60519e-45 | 40 | 404 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5.60519e-45 | 40 | 404 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5.60519e-45 | 40 | 404 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 6e-19 | 84 | 335 | 51 | 301 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |