| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10004853m |
| Family | CBM43 |
| Protein Properties | Length: 433 Molecular Weight: 46652.5 Isoelectric Point: 5.6888 |
| Chromosome | Chromosome/Scaffold: 7 Start: 5282496 End: 5284447 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 344 | 427 | 1.3e-32 |
| WCVSNGEMAKEKLQAALDYACGEGGADCRPIQPGATCYHPESLEAHASYAFNSYYQKNARRVGTCFFGGAAHVVTQPPRFGKCE | |||
| GH17 | 2 | 321 | 0 |
| IGVNYGRIANNLPSPKNVVNLVKSQGISRIKIYDTDKNVLTALANSGIKVIVALPNELLFSAASNQSFADYWVQTNVTSYFPATEIEAIAVGNEVFVDPK NTTPYLVPAMKNIHTSLVKYNLDKAIKISSPVALSALANSYPPSSGSFKPDLIEPVIRPMLDLLQHTSSYLMVNAYPFFAYSGNADKISLDYALFQENAG NIDSGTGLKYNSLFDAQVDAVYAALSAVGFNDVKVMVTETGWPSVGDDNELGASEANAAAYNGGLVKRVLTGNGTPLRPRDPLNVYLFALFNENQKPGPT SERNYGLFYPNEGRVYDVPF | |||
| Full Sequence |
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| Protein Sequence Length: 433 Download |
| MIGVNYGRIA NNLPSPKNVV NLVKSQGISR IKIYDTDKNV LTALANSGIK VIVALPNELL 60 FSAASNQSFA DYWVQTNVTS YFPATEIEAI AVGNEVFVDP KNTTPYLVPA MKNIHTSLVK 120 YNLDKAIKIS SPVALSALAN SYPPSSGSFK PDLIEPVIRP MLDLLQHTSS YLMVNAYPFF 180 AYSGNADKIS LDYALFQENA GNIDSGTGLK YNSLFDAQVD AVYAALSAVG FNDVKVMVTE 240 TGWPSVGDDN ELGASEANAA AYNGGLVKRV LTGNGTPLRP RDPLNVYLFA LFNENQKPGP 300 TSERNYGLFY PNEGRVYDVP FTSRSTPVNG NGAGVPVEQE GHTWCVSNGE MAKEKLQAAL 360 DYACGEGGAD CRPIQPGATC YHPESLEAHA SYAFNSYYQK NARRVGTCFF GGAAHVVTQP 420 PRFGKCEFPT GQ* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 5.0e-6 | 22 | 312 | 298 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-21 | 343 | 415 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-35 | 343 | 428 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-110 | 2 | 321 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL77689.1 | 0 | 1 | 432 | 26 | 460 | AT5g55180/MCO15_13 [Arabidopsis thaliana] |
| GenBank | AAM66024.1 | 0 | 1 | 432 | 26 | 460 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
| EMBL | CAB36529.1 | 0 | 1 | 422 | 24 | 445 | putative beta-1, 3-glucanase [Arabidopsis thaliana] |
| RefSeq | NP_194413.2 | 0 | 1 | 432 | 24 | 455 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_568822.1 | 0 | 1 | 432 | 26 | 460 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghs_B | 0 | 2 | 321 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 2 | 321 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 2cyg_A | 0 | 2 | 321 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 2 | 322 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0 | 2 | 322 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY277767 | 406 | 2 | 390 | 0 |
| EX140875 | 271 | 166 | 433 | 0 |
| DY269969 | 310 | 2 | 311 | 0 |
| DT574357 | 282 | 2 | 283 | 0 |
| EX092647 | 261 | 1 | 261 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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