| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10004854m |
| Family | GH5 |
| Protein Properties | Length: 433 Molecular Weight: 50237.3 Isoelectric Point: 8.2067 |
| Chromosome | Chromosome/Scaffold: 7 Start: 4743435 End: 4746272 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 56 | 379 | 1.4e-33 |
| PLYVNGWNSYWFMNHAVDEHSRNLVGEMLEAGAKMGLTVCRTWAFNDGGYNALQISPGRFDERVFQALDHVIAEAKKHDVRLLLSLVNNLQAYGGKTQYV QWAWQEGVGLSSSNDSFFFDPSIRNYFKNYLKALLTRKNSVTGIEYRNDPTIFAWELINEPRCTTDVSGKTLQDWIEEMTGFIKSIDDKHLLTVGLEGFY GPENPKRLTINPEQWASQLGSDFVQNSNSSNIDFASVHVYPDHWFHNQTFEEKLKFVVKWMQSHIEDGMKELKKPVLFTEFGLSNLNKDYEPAQRDKFYR VIFDVVYKSAKRRKAGAGSLVWQL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 433 Download |
| MVSSRNRPML RILGFFICAA FIYLSFRDLW LNHYKRKPEL GFVKRNGTQF VLDDMPLYVN 60 GWNSYWFMNH AVDEHSRNLV GEMLEAGAKM GLTVCRTWAF NDGGYNALQI SPGRFDERVF 120 QALDHVIAEA KKHDVRLLLS LVNNLQAYGG KTQYVQWAWQ EGVGLSSSND SFFFDPSIRN 180 YFKNYLKALL TRKNSVTGIE YRNDPTIFAW ELINEPRCTT DVSGKTLQDW IEEMTGFIKS 240 IDDKHLLTVG LEGFYGPENP KRLTINPEQW ASQLGSDFVQ NSNSSNIDFA SVHVYPDHWF 300 HNQTFEEKLK FVVKWMQSHI EDGMKELKKP VLFTEFGLSN LNKDYEPAQR DKFYRVIFDV 360 VYKSAKRRKA GAGSLVWQLF MEGMETFSDD FGIVPHEQDS IYKLMIEQSC RLGKVTGRLK 420 ERKLKELCSH RH* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00150 | Cellulase | 9.0e-9 | 203 | 349 | 149 | + Cellulase (glycosyl hydrolase family 5). | ||
| COG3934 | COG3934 | 4.0e-25 | 84 | 397 | 318 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD20927.1 | 0 | 6 | 431 | 7 | 402 | (1-4)-beta-mannan endohydrolase [Arabidopsis thaliana] |
| GenBank | ABK95966.1 | 0 | 12 | 432 | 14 | 435 | unknown [Populus trichocarpa] |
| RefSeq | NP_179660.2 | 0 | 6 | 431 | 7 | 432 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | NP_194561.1 | 0 | 1 | 432 | 1 | 431 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002330687.1 | 0 | 12 | 432 | 14 | 435 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 42 | 416 | 6 | 373 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 0 | 69 | 395 | 34 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 0 | 69 | 395 | 34 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 0 | 69 | 395 | 34 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 0 | 69 | 395 | 34 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
