| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10004942m |
| Family | PL1 |
| Protein Properties | Length: 410 Molecular Weight: 45121.1 Isoelectric Point: 7.95 |
| Chromosome | Chromosome/Scaffold: 7 Start: 6040600 End: 6042757 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 122 | 328 | 0 |
| VIQDEPLWIIFQRDMTIRLKEELIMNSFKTIDGRGASVHISGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRSSPRHFGWRTISDGDGVSIFGGSHVWV DHCSLSNCEDGLIDAIMGSTAITLSNNHMTHHDKVMLLGHSDTYTRDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS QGNRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 410 Download |
| MEMQTKKLFI ITIVSFLLYA PLFLSSPVPD PESVVEEVHK SINASVAGRR KLGYLSCTTG 60 NPIDDCWRCD PHWEQHRQRL ADCAIGFGKN AIGGRDGRIY VVTDSGDDNP VSPKPGTLRH 120 AVIQDEPLWI IFQRDMTIRL KEELIMNSFK TIDGRGASVH ISGGPCITIQ YVTNIIIHGI 180 HIHDCKQGGN AMVRSSPRHF GWRTISDGDG VSIFGGSHVW VDHCSLSNCE DGLIDAIMGS 240 TAITLSNNHM THHDKVMLLG HSDTYTRDKN MQITIAFNHF GEGLVQRMPR CRHGYFHVVN 300 NDYTHWEMYA IGGSANPTIN SQGNRFLAPN IRFSKEVTKH EDAPESEWKR WNWRSSGDLL 360 LNGAFFTPSG GAASSSYAKA SSLGAKPSSL VGPLTSGSGA LNCRKGSRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13229 | Beta_helix | 0.007 | 166 | 254 | 90 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
| COG3866 | PelB | 2.0e-26 | 148 | 326 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-72 | 141 | 326 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-81 | 135 | 330 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK25850.1 | 0 | 1 | 409 | 1 | 408 | AF360140_1 putative pectate lyase [Arabidopsis thaliana] |
| GenBank | AAM65103.1 | 0 | 3 | 409 | 1 | 406 | putative pectate lyase [Arabidopsis thaliana] |
| EMBL | CAA22985.1 | 0 | 3 | 409 | 1 | 404 | putative pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_567707.1 | 0 | 1 | 409 | 1 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002322215.1 | 0 | 22 | 409 | 19 | 403 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 61 | 401 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 61 | 401 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-17 | 130 | 327 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 0.000000000000002 | 133 | 338 | 135 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 2bsp_A | 0.000000000000006 | 133 | 338 | 135 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |
