| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10004963m |
| Family | GH10 |
| Protein Properties | Length: 403 Molecular Weight: 46022.8 Isoelectric Point: 5.4554 |
| Chromosome | Chromosome/Scaffold: 7 Start: 203036 End: 205008 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 56 | 317 | 0 |
| ISKDFPIGSAISKTILGNIPYQEWFVKRFDATVFENELKWYATEPDQGKLNYTYPDQMMSFVRANRIIARGHNIFWEDPKYTPDWVRNLTGSDLRSAVNQ RIRSLMTRYRGEFVHWDVSNEMLHFDFYETRLGKNASYGFFAAAREIDSLATLFLNDFNVVETCSDERSTVDEYIAKVRELQRYDGAQMDGIGLEGHFTT PNVALMRAILDKLATLQLPIWLTEIDISSSLDHRTQGNYLEQVLREGFSHPSVNGIMLWTAL | |||
| Full Sequence |
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| Protein Sequence Length: 403 Download |
| MQLQVASASL QPFTQEQWRN SQDYFINTER KRAVTIHVSR ENGESVEGAA VTVEQISKDF 60 PIGSAISKTI LGNIPYQEWF VKRFDATVFE NELKWYATEP DQGKLNYTYP DQMMSFVRAN 120 RIIARGHNIF WEDPKYTPDW VRNLTGSDLR SAVNQRIRSL MTRYRGEFVH WDVSNEMLHF 180 DFYETRLGKN ASYGFFAAAR EIDSLATLFL NDFNVVETCS DERSTVDEYI AKVRELQRYD 240 GAQMDGIGLE GHFTTPNVAL MRAILDKLAT LQLPIWLTEI DISSSLDHRT QGNYLEQVLR 300 EGFSHPSVNG IMLWTALHPY GCYEMCLTDD KFRNLPAGDV VDQKLVEWKT GGVKATTDDH 360 GSLTFYGFLG EYSVGIVYQG KSVSTTFSLS RSPETKHVRL QI* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 3.0e-34 | 55 | 283 | 244 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-55 | 54 | 314 | 278 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 8.0e-78 | 93 | 341 | 270 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB37521.1 | 0 | 1 | 402 | 24 | 433 | putative protein [Arabidopsis thaliana] |
| EMBL | CBI37893.1 | 0 | 1 | 402 | 225 | 625 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_195577.2 | 0 | 1 | 402 | 161 | 562 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | XP_002277675.1 | 0 | 1 | 402 | 149 | 549 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002534153.1 | 0 | 1 | 402 | 73 | 473 | Endo-1,4-beta-xylanase A precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 3e-27 | 62 | 341 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1tux_A | 8e-26 | 84 | 345 | 40 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1x_A | 1e-24 | 84 | 345 | 40 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1w_A | 1e-24 | 84 | 345 | 40 | 301 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2g4f_B | 2e-24 | 44 | 282 | 2 | 239 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY024035 | 264 | 116 | 377 | 0 |
| EY937444 | 221 | 118 | 335 | 0 |
| ES803339 | 254 | 47 | 300 | 0 |
| GR953916 | 293 | 36 | 328 | 0 |
| EY937444 | 22 | 97 | 118 | 0.093 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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