Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10005030m |
Family | CBM43 |
Protein Properties | Length: 386 Molecular Weight: 40632.9 Isoelectric Point: 6.9811 |
Chromosome | Chromosome/Scaffold: 7 Start: 2180183 End: 2183402 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 248 | 329 | 2.5e-33 |
WCVPKKGATNEQLQASLDWACGQGIDCGAIQPGGACFEPNNVASHAAYAMNMYYQKSPKQTTDCDFSKTATVTSQNPSYNSC | |||
GH17 | 6 | 222 | 0 |
NLVNQLLPAMQNVQKALEAVSLGGKIKVSTVHAMTVLGSSDPPSSGSFAAGYQTGLKGILQFLSDTGSPFAINPYPFFAYQSDPRPETLSFCLFQPNAGR VDSKTGIKYTNMFDAQVDAVHSALKSMGFEKVEIVVAETGWASRGDANEVGTSVDNAKAYNGNLIAHLKSMIGTPLMPGKPVDTYIFALYEENLKPGPSS ERAFGLFKTDLSMAYDV |
Full Sequence |
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Protein Sequence Length: 386 Download |
MSNDPNLVNQ LLPAMQNVQK ALEAVSLGGK IKVSTVHAMT VLGSSDPPSS GSFAAGYQTG 60 LKGILQFLSD TGSPFAINPY PFFAYQSDPR PETLSFCLFQ PNAGRVDSKT GIKYTNMFDA 120 QVDAVHSALK SMGFEKVEIV VAETGWASRG DANEVGTSVD NAKAYNGNLI AHLKSMIGTP 180 LMPGKPVDTY IFALYEENLK PGPSSERAFG LFKTDLSMAY DVGLAKSSSS GSNSSGQTPS 240 GKVTSTGWCV PKKGATNEQL QASLDWACGQ GIDCGAIQPG GACFEPNNVA SHAAYAMNMY 300 YQKSPKQTTD CDFSKTATVT SQNPSYNSCV YPGGGGGGAA GSKAVMNKYV SSDKVEKTNG 360 AMETKLSSSL SCLLIFMFLV FHVNM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.002 | 136 | 215 | 83 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 1.0e-22 | 248 | 318 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-40 | 248 | 331 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-66 | 9 | 222 | 214 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD22313.1 | 0 | 1 | 325 | 121 | 443 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
GenBank | ABK95331.1 | 0 | 1 | 334 | 120 | 454 | unknown [Populus trichocarpa] |
RefSeq | NP_179219.4 | 0 | 1 | 380 | 121 | 489 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | NP_195174.6 | 0 | 1 | 366 | 122 | 485 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | XP_002509479.1 | 0 | 1 | 334 | 124 | 458 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 1.99965e-42 | 7 | 225 | 105 | 316 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 3f55_C | 1.99965e-42 | 7 | 225 | 105 | 316 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 3f55_B | 1.99965e-42 | 7 | 225 | 105 | 316 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 3f55_A | 1.99965e-42 | 7 | 225 | 105 | 316 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 3em5_D | 1.99965e-42 | 7 | 225 | 105 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO781349 | 329 | 4 | 331 | 0 |
DY293193 | 323 | 17 | 332 | 0 |
HO796302 | 329 | 4 | 331 | 0 |
HO782823 | 345 | 2 | 331 | 0 |
EX255941 | 306 | 28 | 332 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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