Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10005790m |
Family | CBM43 |
Protein Properties | Length: 196 Molecular Weight: 20139.8 Isoelectric Point: 5.7042 |
Chromosome | Chromosome/Scaffold: 7 Start: 11106508 End: 11108074 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 23 | 104 | 2.7e-33 |
WCVARFDVTSQALQAALDYACAAGADCAPIQPNGLCFLPNTVQAHASYAFNSYFQRAAMAPGSCNFAGTSTVAKTDPSYGSC |
Full Sequence |
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Protein Sequence Length: 196 Download |
MALFLQTLSF LLLLLFPSST AMWCVARFDV TSQALQAALD YACAAGADCA PIQPNGLCFL 60 PNTVQAHASY AFNSYFQRAA MAPGSCNFAG TSTVAKTDPS YGSCVYPNSV RNAGGSASTT 120 TMGGTPRTTT GNSPMTTLRP PSSGTTTSPF GISGGGLNPE GTTTTNTDES GAYVIDKTTS 180 TVSIALLVAL LLWFI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-10 | 23 | 93 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-26 | 23 | 106 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU17645.1 | 1.4013e-45 | 21 | 195 | 28 | 190 | unknown [Glycine max] |
EMBL | CAB41118.1 | 0 | 1 | 195 | 39 | 256 | putative protein [Arabidopsis thaliana] |
RefSeq | NP_193096.5 | 0 | 1 | 195 | 39 | 231 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002267551.1 | 0 | 21 | 194 | 48 | 214 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002518089.1 | 0 | 1 | 111 | 5 | 115 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 3e-25 | 17 | 107 | 7 | 97 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |