| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10006187m |
| Family | CBM43 |
| Protein Properties | Length: 477 Molecular Weight: 51639 Isoelectric Point: 6.3915 |
| Chromosome | Chromosome/Scaffold: 7 Start: 9185073 End: 9186590 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM43 | 360 | 439 | 1.5e-26 |
| WCVAHPSRDMTLVGDHLRLACSAADCTTLNNGGSCSQLGEKDNISYAFNSYYQMQMQNEKSCDFDGLGMVTFLDPSVGDC | |||
| GH17 | 26 | 339 | 0 |
| IGVNWGTVSFHKLRPSTVVDLLKANKITKVKLFDTNPDALRALMGTGIQVMVGIPNEMLATFNPDLFVQQNLSRFIGKNGADIRYVAVGNEPFLTSYGGQ FQNYVVPAMVNLQQSLVRANLANYVKLVVPCNADAYEANVPSQGTFRPELTQIMTQLVSFLNSNGSPFVVNIYPFLSLYGNSDFPQDYAFFEGSSHPVPD GPSTYYNAFDGNFDTLVAALTKLGYGQMPIVIGEIGWPTDGAVGANLTAAQVFNQGLISHVLSNKGTPLRPGSPPADVYLFGLLDEGAKSTLPGNFERHW GIFSFDGQAKYRLN | |||
| Full Sequence |
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| Protein Sequence Length: 477 Download |
| MGSGVAVAAL FTLSLLLVSY EVDSAIGVNW GTVSFHKLRP STVVDLLKAN KITKVKLFDT 60 NPDALRALMG TGIQVMVGIP NEMLATFNPD LFVQQNLSRF IGKNGADIRY VAVGNEPFLT 120 SYGGQFQNYV VPAMVNLQQS LVRANLANYV KLVVPCNADA YEANVPSQGT FRPELTQIMT 180 QLVSFLNSNG SPFVVNIYPF LSLYGNSDFP QDYAFFEGSS HPVPDGPSTY YNAFDGNFDT 240 LVAALTKLGY GQMPIVIGEI GWPTDGAVGA NLTAAQVFNQ GLISHVLSNK GTPLRPGSPP 300 ADVYLFGLLD EGAKSTLPGN FERHWGIFSF DGQAKYRLNL GLGNRGLKNA KNVQYLPSRW 360 CVAHPSRDMT LVGDHLRLAC SAADCTTLNN GGSCSQLGEK DNISYAFNSY YQMQMQNEKS 420 CDFDGLGMVT FLDPSVGDCR FLVGVTDKGL PSSAKPMARW SIYHICIGVV ILTLTM* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.003 | 165 | 331 | 180 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-18 | 359 | 428 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 4.0e-30 | 360 | 441 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-71 | 26 | 336 | 318 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD65105.1 | 0 | 1 | 475 | 1 | 470 | glycosyl hydrolase family protein [Brassica oleracea] |
| EMBL | CAB10499.1 | 0 | 1 | 476 | 28 | 502 | glucanase like protein [Arabidopsis thaliana] |
| RefSeq | NP_193451.2 | 0 | 1 | 476 | 1 | 475 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002329964.1 | 0 | 3 | 476 | 5 | 485 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525026.1 | 0 | 8 | 466 | 6 | 468 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 2.94273e-44 | 41 | 340 | 17 | 315 | A Chain A, Arabidopsis Thaliana Peroxidase N |
| PDB | 3f55_C | 2.94273e-44 | 41 | 340 | 17 | 315 | A Chain A, Arabidopsis Thaliana Peroxidase N |
| PDB | 3f55_B | 2.94273e-44 | 41 | 340 | 17 | 315 | A Chain A, Arabidopsis Thaliana Peroxidase N |
| PDB | 3f55_A | 2.94273e-44 | 41 | 340 | 17 | 315 | A Chain A, Arabidopsis Thaliana Peroxidase N |
| PDB | 3em5_D | 2.94273e-44 | 41 | 340 | 17 | 315 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
