Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10006248m |
Family | GH28 |
Protein Properties | Length: 394 Molecular Weight: 42794.6 Isoelectric Point: 8.0523 |
Chromosome | Chromosome/Scaffold: 7 Start: 3121301 End: 3124202 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 16 | 340 | 0 |
KDQATSLVIHAYEKYFIQPQTFRGPCVSRNLHIQIDGKLEAPKMVKEWKKINKGNRCWLCFDNVTGLVLNGSGVLHPHGEAWWSSVEHSNRPRTVGFNGS SNIIYNGLTQMNSPKNHISIWNCTNATLSNLQLIAPKDSPNTDGIDIALSNNIKIFNSNIQTGDDCVAINGGSYDIDITHVACGPGHGISVGSLGKGGLN ETVENVKVRHCSFNGTQNGARIKTWAGGNGYAKNILYENITLINVNFPIIIDQHYCNGGRNCTEEATAVKVSNVTFKNFQGTCGNKIAIKLDCDKAVGCH DIKMENINITSSSTNKTLTAYCQFA |
Full Sequence |
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Protein Sequence Length: 394 Download |
MAFQDAWKAI CEANGKDQAT SLVIHAYEKY FIQPQTFRGP CVSRNLHIQI DGKLEAPKMV 60 KEWKKINKGN RCWLCFDNVT GLVLNGSGVL HPHGEAWWSS VEHSNRPRTV GFNGSSNIIY 120 NGLTQMNSPK NHISIWNCTN ATLSNLQLIA PKDSPNTDGI DIALSNNIKI FNSNIQTGDD 180 CVAINGGSYD IDITHVACGP GHGISVGSLG KGGLNETVEN VKVRHCSFNG TQNGARIKTW 240 AGGNGYAKNI LYENITLINV NFPIIIDQHY CNGGRNCTEE ATAVKVSNVT FKNFQGTCGN 300 KIAIKLDCDK AVGCHDIKME NINITSSSTN KTLTAYCQFA DVVSQIVSVK IKCTSDEEPL 360 APASAPYAKP LPPTQPPSLS PLPYSINFFK AFL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-77 | 2 | 345 | 353 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-82 | 2 | 337 | 343 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-83 | 36 | 329 | 299 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 3.0e-86 | 2 | 353 | 358 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 8.0e-104 | 2 | 341 | 340 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_194963.2 | 0 | 2 | 286 | 53 | 338 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_194964.2 | 0 | 59 | 393 | 1 | 347 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_680757.1 | 0 | 1 | 385 | 4 | 408 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 2 | 355 | 45 | 395 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 355 | 45 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-25 | 90 | 329 | 127 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 7e-20 | 61 | 297 | 56 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-20 | 61 | 297 | 56 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-20 | 61 | 297 | 56 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-20 | 61 | 297 | 56 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV536748 | 260 | 52 | 308 | 0 |
EY474520 | 221 | 107 | 327 | 0 |
GT141262 | 237 | 123 | 359 | 0 |
CV538127 | 226 | 21 | 243 | 0 |
DR050772 | 294 | 46 | 324 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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