| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10006308m |
| Family | CE8 |
| Protein Properties | Length: 328 Molecular Weight: 36086.8 Isoelectric Point: 6.934 |
| Chromosome | Chromosome/Scaffold: 7 Start: 14538209 End: 14539436 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 33 | 323 | 0 |
| LVVDVKGSGSFITVQEAVNSVPDLSKSKILIHVKAGVYREKVIISERERNIVLQGTGFESTIIEWNDTANSSGSTANSYSFAIFSTNFVAYNISFKNYAP EPDPGMIGAQAVALRIDGDQAAFYGCGFYGAQDTLLDNRGRHFFKHCFIQGSIYIIFGNGRSIYQDCIIHSIAKESASGMSGCITAHGKELEDEKTGFSF VNCRIDGTGKVWLGRAWRPYARVVFSKTYMSQVVSNEGWNDMKDHKTQKTVYFGEHRCYGPGANHSGRVPYGKQLTDVEAAPFTNISFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 328 Download |
| MINLKIIIFI SLLSSITSLY EISTVSAGFS LVLVVDVKGS GSFITVQEAV NSVPDLSKSK 60 ILIHVKAGVY REKVIISERE RNIVLQGTGF ESTIIEWNDT ANSSGSTANS YSFAIFSTNF 120 VAYNISFKNY APEPDPGMIG AQAVALRIDG DQAAFYGCGF YGAQDTLLDN RGRHFFKHCF 180 IQGSIYIIFG NGRSIYQDCI IHSIAKESAS GMSGCITAHG KELEDEKTGF SFVNCRIDGT 240 GKVWLGRAWR PYARVVFSKT YMSQVVSNEG WNDMKDHKTQ KTVYFGEHRC YGPGANHSGR 300 VPYGKQLTDV EAAPFTNISF IDGEEWL* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02432 | PLN02432 | 7.0e-96 | 24 | 327 | 304 | + putative pectinesterase |
| PLN02634 | PLN02634 | 1.0e-103 | 31 | 327 | 305 | + probable pectinesterase |
| PLN02665 | PLN02665 | 9.0e-108 | 35 | 327 | 294 | + pectinesterase family protein |
| PLN02682 | PLN02682 | 2.0e-125 | 30 | 327 | 305 | + pectinesterase family protein |
| PLN02304 | PLN02304 | 2.0e-136 | 32 | 327 | 299 | + probable pectinesterase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO22722.1 | 0 | 30 | 327 | 88 | 385 | putative pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_181208.1 | 0 | 4 | 327 | 2 | 333 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_181209.1 | 0 | 30 | 327 | 88 | 385 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002264941.1 | 0 | 32 | 327 | 14 | 309 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002326223.1 | 0 | 30 | 327 | 16 | 313 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 33 | 327 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 8.00141e-43 | 34 | 327 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 8e-19 | 42 | 316 | 17 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 8e-19 | 42 | 316 | 17 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 8e-19 | 42 | 316 | 17 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
