| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10006488m |
| Family | GH14 |
| Protein Properties | Length: 549 Molecular Weight: 61645.4 Isoelectric Point: 7.0599 |
| Chromosome | Chromosome/Scaffold: 7 Start: 9227670 End: 9229668 |
| Description | chloroplast beta-amylase |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 89 | 503 | 0 |
| FVMLPLDTVTMSGHLNKPRAMNASLMALKGAGVEGVMVDAWWGLVEKDGPMKYNWDGYAELIQMVQRHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEE ISKNPDLVYTDKSGRRNPEYISLGCDYVPVLRGRTPIQVYSDFMRSFRERFDNYIGGVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMK SSLQAYAESIGKTNWGTSGPHDAGEYKNLPEDTEFFRRDGTWNSEYGKFFMEWYSGKLLEHGDQLLSSAKGIFQGSGAKLSGKVAGIHWHYNTRSHAAEL TAGYYNTRNHDGYLPIAKMFNKHGVVLNFTCMEMKDGEQPEHANCSPEGLVKQVQNATRQAGTELAGENALERYDSSAFGQVVATNRSDSGNGLTAFTYL RMNKRLFEGQNWQQL | |||
| Full Sequence |
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| Protein Sequence Length: 549 Download |
| MELTLNSSSS LIKRKDAKNS RNQESSSNNM TFAKMRPPTY QFQAKSSVKE MKFTHEKTFT 60 PENETTERWE KLHVLSYPHP KSDSSVPVFV MLPLDTVTMS GHLNKPRAMN ASLMALKGAG 120 VEGVMVDAWW GLVEKDGPMK YNWDGYAELI QMVQRHGLKL QVVMSFHQCG GNVGDSCSIP 180 LPPWVLEEIS KNPDLVYTDK SGRRNPEYIS LGCDYVPVLR GRTPIQVYSD FMRSFRERFD 240 NYIGGVIAEI QVGMGPCGEL RYPSYPESNG TWRFPGIGEF QCYDKYMKSS LQAYAESIGK 300 TNWGTSGPHD AGEYKNLPED TEFFRRDGTW NSEYGKFFME WYSGKLLEHG DQLLSSAKGI 360 FQGSGAKLSG KVAGIHWHYN TRSHAAELTA GYYNTRNHDG YLPIAKMFNK HGVVLNFTCM 420 EMKDGEQPEH ANCSPEGLVK QVQNATRQAG TELAGENALE RYDSSAFGQV VATNRSDSGN 480 GLTAFTYLRM NKRLFEGQNW QQLVEFVKNM KEGGHGRKLS EEDTTGSDLY VGFVRGRVAE 540 KVEEASLV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02905 | PLN02905 | 3.0e-150 | 86 | 510 | 432 | + beta-amylase | ||
| PLN02803 | PLN02803 | 0 | 1 | 548 | 548 | + beta-amylase | ||
| PLN00197 | PLN00197 | 0 | 86 | 540 | 461 | + beta-amylase; Provisional | ||
| pfam01373 | Glyco_hydro_14 | 0 | 89 | 506 | 431 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
| PLN02801 | PLN02801 | 0 | 86 | 510 | 433 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB46051.1 | 0 | 51 | 548 | 1 | 498 | putative beta-amylase [Arabidopsis thaliana] |
| RefSeq | NP_567523.1 | 0 | 1 | 548 | 1 | 548 | CT-BMY (CHLOROPLAST BETA-AMYLASE); beta-amylase [Arabidopsis thaliana] |
| RefSeq | XP_002282871.1 | 0 | 1 | 548 | 1 | 543 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002326690.1 | 0 | 1 | 548 | 1 | 547 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329547.1 | 0 | 1 | 548 | 1 | 548 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wdp_A | 0 | 86 | 510 | 12 | 441 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 1q6c_A | 0 | 86 | 510 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1bfn_A | 0 | 86 | 510 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1ukp_D | 0 | 86 | 510 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_C | 0 | 86 | 510 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| BU103692 | 449 | 86 | 534 | 0 |
| HO794833 | 412 | 124 | 535 | 0 |
| HO781538 | 405 | 30 | 433 | 0 |
| HO825836 | 375 | 160 | 534 | 0 |
| CK293967 | 311 | 160 | 470 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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