| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10006586m |
| Family | CBM22 |
| Protein Properties | Length: 562 Molecular Weight: 63711.1 Isoelectric Point: 7.8103 |
| Chromosome | Chromosome/Scaffold: 7 Start: 2449243 End: 2451411 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 46 | 161 | 3.5e-21 |
| IIVNPDLRDGSLGWTPLGNAKVDFREIGNHNFVVARDRRQPYDSVSQKVYLEKGLLYTFSAWLQVSKGKAPVKAVFKKNGEYKHAGSFVAESKCWSMLKG GLTVDESGPAELYFES | |||
| GH10 | 221 | 480 | 0 |
| KKLGFPFGCEVEKNILGDKAYQNWFTQRFTVTTFANEMKWYSTENTRGKEDYTTADAMLSFFKKHGVAVRGHNIVWNDPKYQLQWLDSLSGHDFYKAVKQ RIISVVSRYKGQVASWDVVNENLHFSFFENRMGPKASYNIYKMVQAVDPTSIKFMNEYNTLEEPRDSDSSPARYLQKLRELKSIQVCGNISLGIGLESHF KTPNIPYMRSALDTLGATGLPIWLTEVDVDAPPNVQAKYYEQVLREGHAHPQVKGIVTWA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 562 Download |
| MKRLLLLLLC SLALSSGCES KVVPYDYSAT IECLEIPLKP QYNGGIIVNP DLRDGSLGWT 60 PLGNAKVDFR EIGNHNFVVA RDRRQPYDSV SQKVYLEKGL LYTFSAWLQV SKGKAPVKAV 120 FKKNGEYKHA GSFVAESKCW SMLKGGLTVD ESGPAELYFE SEDTTVEIWV DSVSLQPFTQ 180 EEWNSHQEQS IQKERKRSVR IRAVNSKGEP IPKATITIEQ KKLGFPFGCE VEKNILGDKA 240 YQNWFTQRFT VTTFANEMKW YSTENTRGKE DYTTADAMLS FFKKHGVAVR GHNIVWNDPK 300 YQLQWLDSLS GHDFYKAVKQ RIISVVSRYK GQVASWDVVN ENLHFSFFEN RMGPKASYNI 360 YKMVQAVDPT SIKFMNEYNT LEEPRDSDSS PARYLQKLRE LKSIQVCGNI SLGIGLESHF 420 KTPNIPYMRS ALDTLGATGL PIWLTEVDVD APPNVQAKYY EQVLREGHAH PQVKGIVTWA 480 GYSPSGCYRM CLTDGNFKNL PTGDVVDKLV HEWGGFRRQT TGVTDSDGFF EASLFHGDYE 540 LKISHPLTNS KESHSFKFTT SD 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 6.0e-6 | 44 | 164 | 132 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 8.0e-36 | 220 | 479 | 283 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-50 | 225 | 479 | 277 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 4.0e-81 | 258 | 506 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA19866.1 | 0 | 26 | 562 | 119 | 655 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA19866.1 | 0 | 398 | 505 | 2 | 109 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA19868.1 | 0 | 37 | 560 | 22 | 558 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_195110.3 | 0 | 16 | 562 | 16 | 562 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | NP_195112.2 | 0 | 1 | 560 | 1 | 560 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 6e-28 | 227 | 506 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0n_A | 2e-24 | 213 | 479 | 2 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0m_A | 2e-24 | 213 | 479 | 2 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0l_A | 2e-24 | 213 | 479 | 2 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0k_A | 2e-24 | 213 | 479 | 2 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
