| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10006630m |
| Family | PL1 |
| Protein Properties | Length: 370 Molecular Weight: 41047.3 Isoelectric Point: 9.43 |
| Chromosome | Chromosome/Scaffold: 7 Start: 11448437 End: 11450627 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 85 | 288 | 0 |
| DQPLWIVFKRDMVITLRQELIMNSFKTIDGRGSNVHIAGGACITIQYVTNIIIHGINIHDCKRTGNAMVRSSESHYGWRTMADGDGISIFGSSHIWIDHN SLSNCADGLIDAIMGSTAITISNNYMTHHNEAILLGHTDSYTRDKMMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGN RFLA | |||
| Full Sequence |
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| Protein Sequence Length: 370 Download |
| SIRNSTYRRK LGYFSSCSTG NPIDDCWRCD KKWHRQRKRL AGCAIGFGRN AVGGRDGRYY 60 IVTDPSDHDP VNPKPGTLRY AVIQDQPLWI VFKRDMVITL RQELIMNSFK TIDGRGSNVH 120 IAGGACITIQ YVTNIIIHGI NIHDCKRTGN AMVRSSESHY GWRTMADGDG ISIFGSSHIW 180 IDHNSLSNCA DGLIDAIMGS TAITISNNYM THHNEAILLG HTDSYTRDKM MQVTIAYNHF 240 GEGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSANPTIN SQGNRFLAPG NRFAKEVTKR 300 VNAREGEWNN WNWRSQGDLM LNGAYFTSSG AGASSNYARA SSLAAKSSSL VGMLTSSSGA 360 LKCRIGTLC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-24 | 108 | 286 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-66 | 102 | 286 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-76 | 95 | 290 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK66161.1 | 0 | 1 | 369 | 1 | 368 | pectate lyase [Fragaria x ananassa] |
| DDBJ | BAB01216.1 | 0 | 2 | 365 | 74 | 436 | pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_189110.1 | 0 | 2 | 369 | 74 | 440 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_193057.4 | 0 | 1 | 369 | 33 | 401 | lyase/ pectate lyase [Arabidopsis thaliana] |
| Swiss-Prot | Q9SVQ6 | 0 | 1 | 369 | 50 | 418 | PEL14_ARATH RecName: Full=Putative pectate lyase 14; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 21 | 361 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 21 | 361 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.000000000000002 | 90 | 295 | 50 | 255 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000003 | 111 | 286 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.00000000000006 | 111 | 298 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778688 | 370 | 1 | 370 | 0 |
| DY025641 | 285 | 9 | 293 | 0 |
| FG606120 | 328 | 8 | 335 | 0 |
| CK262438 | 298 | 33 | 330 | 0 |
| EL457563 | 285 | 17 | 301 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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