Basic Information | |
---|---|
Species | Capsella rubella |
Cazyme ID | Carubv10006680m |
Family | GH28 |
Protein Properties | Length: 421 Molecular Weight: 45618.8 Isoelectric Point: 9.7926 |
Chromosome | Chromosome/Scaffold: 7 Start: 8746862 End: 8748695 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 64 | 408 | 0 |
WDKACKSYSSSVHLIIPRGEFSVGPLRFSGPCTNVSSLTVLVKASTDLSKYRSGGGWIQFGWINGLTLTGGGTFDGQGALAWPFNNCTSDSNCKLLPTSL KFVGMNRTVVRRISSVNSKFFHIALVECRDFKGTRLNITAPSDSPNTDGIHIERSSNVYFSRSHIATGDDCVSIGQGNSQITITSIKCGPGHGISVGSLG RYPNEKDVTGLVVKDCKMSGTTNGIRIKTWANSPGLSAATNMTFQNIIMNNVTNPIIIDQSYCPFSSCISNVPSKVKLSEIYFKNIRGTSSSRIAVQLHC SRGMPCKKIYLENVHLDLSSSDGGTKQSRNRGDEAVSSSCRNVRA |
Full Sequence |
---|
Protein Sequence Length: 421 Download |
MESFRNLKIF FFFFFISTLS SSGAGNLTEQ NRVDKSSVLL VNVRSFGARA NDHKDHTKAF 60 VAAWDKACKS YSSSVHLIIP RGEFSVGPLR FSGPCTNVSS LTVLVKASTD LSKYRSGGGW 120 IQFGWINGLT LTGGGTFDGQ GALAWPFNNC TSDSNCKLLP TSLKFVGMNR TVVRRISSVN 180 SKFFHIALVE CRDFKGTRLN ITAPSDSPNT DGIHIERSSN VYFSRSHIAT GDDCVSIGQG 240 NSQITITSIK CGPGHGISVG SLGRYPNEKD VTGLVVKDCK MSGTTNGIRI KTWANSPGLS 300 AATNMTFQNI IMNNVTNPII IDQSYCPFSS CISNVPSKVK LSEIYFKNIR GTSSSRIAVQ 360 LHCSRGMPCK KIYLENVHLD LSSSDGGTKQ SRNRGDEAVS SSCRNVRANY IGTQIPPPCH 420 * |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 1.0e-68 | 33 | 419 | 390 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-72 | 41 | 403 | 369 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-75 | 32 | 419 | 394 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-81 | 68 | 379 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 0 | 2 | 420 | 419 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA16789.1 | 0 | 59 | 420 | 1 | 362 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI37725.1 | 0 | 7 | 419 | 11 | 387 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_193552.1 | 0 | 1 | 420 | 1 | 414 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002279959.1 | 0 | 7 | 419 | 11 | 419 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312795.1 | 0 | 10 | 419 | 8 | 409 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-25 | 133 | 379 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.0000000000002 | 129 | 355 | 71 | 307 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 0.0000000000005 | 102 | 366 | 44 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000000005 | 102 | 366 | 44 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000000005 | 102 | 366 | 44 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |