| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10006720m |
| Family | CBM57 |
| Protein Properties | Length: 634 Molecular Weight: 70996.3 Isoelectric Point: 5.124 |
| Chromosome | Chromosome/Scaffold: 7 Start: 9640043 End: 9643447 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM57 | 381 | 564 | 3.8e-32 |
| HINCGGDEVIINGTKFNADTYDRAPHVFESTINAWVSSNTGNFIDDHRVPEGSGTIWNNTSELKMIDPQLYAQARLSAVSLTYYAMCIVNGDYNVNLHFA EFMFKDDQTFKSLGRRIFDIYIQGKLMVKDFNIVEEAGGVGKAVIKTIPVTITDGKLEIRLYWAGKGTVAIPDKGVYGPLISAI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 634 Download |
| MVSQTRSLVW FLFICLIVST FIGFAQSATL PTQEVEALRI IGNTLKKTTW NFNVNPCDVA 60 SNVAHYIFFV FISYIYRLLK TQNLQGSLPK EFVGLPYLQE INLARNYLNG SIPPEWGALP 120 LVNLTLLGNR LSGPIPKEIG NITTLTRLVL EYNQLSGILP PELGNLSNLQ RLFLSSNNFS 180 GDIPITFGKL TNLTDFRISD NSLTGSIPDF IGDWTELESL VSHGSGLSGP IPVSIAGLTK 240 LEELRISDLT GPGSPVPLLH DISKMKTLIL RNCNLTGELP SFLGTNATLL ENLDLSFNQL 300 SGPIPSTYTE LRDVKNFYLT GNMLNGSVPN WMVKEKDRDT IDLSYNNFSE DTNTQECFFE 360 RILNVYCLKS YQCAKSFYGL HINCGGDEVI INGTKFNADT YDRAPHVFES TINAWVSSNT 420 GNFIDDHRVP EGSGTIWNNT SELKMIDPQL YAQARLSAVS LTYYAMCIVN GDYNVNLHFA 480 EFMFKDDQTF KSLGRRIFDI YIQGKLMVKD FNIVEEAGGV GKAVIKTIPV TITDGKLEIR 540 LYWAGKGTVA IPDKGVYGPL ISAISVDPGK NFQPNKICCL SNIQYSFLTN FIIYTFLSAQ 600 QKHYNYEEDM MEDHFMLLDL NLIISRYNVF MYM* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00113 | PLN00113 | 6.0e-31 | 79 | 348 | 273 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 2.0e-34 | 16 | 349 | 369 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 2.0e-36 | 83 | 349 | 292 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 1.0e-38 | 63 | 351 | 315 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 4.0e-55 | 378 | 564 | 190 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN59317.1 | 0 | 2 | 576 | 1 | 600 | leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] |
| DDBJ | BAB02650.1 | 0 | 2 | 576 | 1 | 622 | receptor-like serine/threonine kinase [Arabidopsis thaliana] |
| EMBL | CBI20121.1 | 0 | 21 | 568 | 18 | 587 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_175747.2 | 0 | 21 | 574 | 18 | 558 | serine/threonine protein kinase-related [Arabidopsis thaliana] |
| RefSeq | NP_188102.4 | 0 | 2 | 576 | 1 | 597 | leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rj0_A | 4e-22 | 79 | 349 | 398 | 714 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3rj0_A | 1e-18 | 82 | 338 | 325 | 561 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3rj0_A | 0.00000000000003 | 103 | 349 | 81 | 353 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3rj0_A | 0.00000000002 | 84 | 329 | 427 | 718 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3rj0_A | 0.0000000001 | 129 | 210 | 639 | 720 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
