y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10006733m |
Family | GH28 |
Protein Properties | Length: 394 Molecular Weight: 44361.4 Isoelectric Point: 7.8456 |
Chromosome | Chromosome/Scaffold: 7 Start: 16370747 End: 16373413 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 71 | 324 | 0 |
AQATMEIPQGYTFLLQPIEFHGPCVSKKINFSINGNLIAPASPDEWDCKNDHCHQWIEFAHIDGLYIDGHGTLDGQGTQWWSLNCTKYKKACLKRPRGVI ISHSSNVHISNIMVKDSPNFQMSLEDSKWVTVKQLTITADGDSPNTDGIHIQRSQNVIVYNSNIRTGDDCVSIGDGSKFINISRISCGPGHGISIGSLGR HGTKETVEDVVVQDCTFRKTTNGVRIKTWQTKAVEIKNVMYNNIYGTSIKKPFV |
Full Sequence |
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Protein Sequence Length: 394 Download |
MAKSVMFLTF LLSLTLFNTF QLAQSYSSII SRRYDRKTFN VLDYGAIGDG SFDDSKAFKD 60 AWKKTCNFFG AQATMEIPQG YTFLLQPIEF HGPCVSKKIN FSINGNLIAP ASPDEWDCKN 120 DHCHQWIEFA HIDGLYIDGH GTLDGQGTQW WSLNCTKYKK ACLKRPRGVI ISHSSNVHIS 180 NIMVKDSPNF QMSLEDSKWV TVKQLTITAD GDSPNTDGIH IQRSQNVIVY NSNIRTGDDC 240 VSIGDGSKFI NISRISCGPG HGISIGSLGR HGTKETVEDV VVQDCTFRKT TNGVRIKTWQ 300 TKAVEIKNVM YNNIYGTSIK KPFVQLLCSK SFPCRDIFMN DINIRDENEE EEEEEEKKYH 360 KSHHYHPYAE CINVKGMSNG VMKPKLACLK SFA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-67 | 70 | 344 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 1.0e-69 | 39 | 390 | 393 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 5.0e-73 | 37 | 344 | 348 | + polygalacturonase | ||
PLN02188 | PLN02188 | 6.0e-75 | 38 | 345 | 349 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 1.0e-76 | 36 | 344 | 349 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB10216.1 | 0 | 1 | 391 | 1 | 408 | polygalacturonase-like protein [Arabidopsis thaliana] |
RefSeq | NP_198807.1 | 0 | 1 | 391 | 1 | 370 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002267133.1 | 0 | 38 | 391 | 25 | 392 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002267182.1 | 0 | 38 | 389 | 25 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002321662.1 | 0 | 31 | 389 | 18 | 352 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-24 | 109 | 324 | 85 | 309 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-17 | 143 | 359 | 80 | 300 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-17 | 143 | 359 | 80 | 300 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-17 | 143 | 359 | 80 | 300 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-17 | 143 | 359 | 80 | 300 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |