PlantCAZyme

CAZyme Information

Basic Information
Species	Capsella rubella
Cazyme ID	Carubv10006745m
Family	GH10
Protein Properties	Length: 540 Molecular Weight: 61087.4 Isoelectric Point: 6.3984
Chromosome	Chromosome/Scaffold: 7 Start: 2452759 End: 2457748
Description	Glycosyl hydrolase family 10 protein
View CDS

External Links
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH10	196	455	0
NRLRFPFGCAVESNILGNQAYQNWFTQRFTVTTFGNEMKWYSTERVRGREDYSTADAMLRFFKQHGIAVRGHNILWDDPKFQPEWVKSMWGNDLYNAVKR RVYSVVSRYKGQLAGWDVVNENLHFSFFESKMGPQSSYNVYAMAHALDPRTTMFMNEYNTLEHPQDPSSSPARYLQKLRELQSIRVGGNIPLGIGLESHF STPNLPYMRSALDTLGATGLPIWLTEVDVDAPPNVRPWYFEQVLREGHSHPKVQGIVMWT

Full Sequence
Protein Sequence Length: 540 Download
MLCSFRHCLE IPNKPQYNGG IILNPDLQNG SQSWSQFGNS KVDFREFGGN KFVVATQRNQ 60 STDSVSQKVY LEKGILYTFS AWLQVSIGNA PVSAVFKKNG EAMHAGSVVA ESKCWSMLKG 120 GLTVDESGPA DLYFESENTT VEIWVDSVSL QPFTHEEWNS HQEQSIDKER KGNVRIRVVN 180 DKGETVPNAT ITIQQNRLRF PFGCAVESNI LGNQAYQNWF TQRFTVTTFG NEMKWYSTER 240 VRGREDYSTA DAMLRFFKQH GIAVRGHNIL WDDPKFQPEW VKSMWGNDLY NAVKRRVYSV 300 VSRYKGQLAG WDVVNENLHF SFFESKMGPQ SSYNVYAMAH ALDPRTTMFM NEYNTLEHPQ 360 DPSSSPARYL QKLRELQSIR VGGNIPLGIG LESHFSTPNL PYMRSALDTL GATGLPIWLT 420 EVDVDAPPNV RPWYFEQVLR EGHSHPKVQG IVMWTGYSPA GCYRMCLTDG NFKNLPTGDV 480 VDKLLREWGG FRSQTTGVAD ADGFFEASLF HGDYDLSISH PFTDSKVSYN FTLSPDDSSS 540 600

Full Sequence

Protein Sequence Length: 540 Download

MLCSFRHCLE IPNKPQYNGG IILNPDLQNG SQSWSQFGNS KVDFREFGGN KFVVATQRNQ    60
STDSVSQKVY LEKGILYTFS AWLQVSIGNA PVSAVFKKNG EAMHAGSVVA ESKCWSMLKG    120
GLTVDESGPA DLYFESENTT VEIWVDSVSL QPFTHEEWNS HQEQSIDKER KGNVRIRVVN    180
DKGETVPNAT ITIQQNRLRF PFGCAVESNI LGNQAYQNWF TQRFTVTTFG NEMKWYSTER    240
VRGREDYSTA DAMLRFFKQH GIAVRGHNIL WDDPKFQPEW VKSMWGNDLY NAVKRRVYSV    300
VSRYKGQLAG WDVVNENLHF SFFESKMGPQ SSYNVYAMAH ALDPRTTMFM NEYNTLEHPQ    360
DPSSSPARYL QKLRELQSIR VGGNIPLGIG LESHFSTPNL PYMRSALDTL GATGLPIWLT    420
EVDVDAPPNV RPWYFEQVLR EGHSHPKVQG IVMWTGYSPA GCYRMCLTDG NFKNLPTGDV    480
VDKLLREWGG FRSQTTGVAD ADGFFEASLF HGDYDLSISH PFTDSKVSYN FTLSPDDSSS    540
                                                                     600

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
pfam02018	CBM_4_9	0.0006	19	139	132	+ Carbohydrate binding domain. This family includes diverse carbohydrate binding domains.
COG3693	XynA	3.0e-24	224	424	212	+ Beta-1,4-xylanase [Carbohydrate transport and metabolism]
pfam00331	Glyco_hydro_10	7.0e-43	199	454	275	+ Glycosyl hydrolase family 10.
smart00633	Glyco_10	4.0e-71	233	481	272	+ Glycosyl hydrolase family 10.

Gene Ontology
GO Term	Description
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975	carbohydrate metabolic process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
EMBL	CAA19865.1	0	8	539	2	532	putative protein [Arabidopsis thaliana]
EMBL	CAA19866.1	0	6	540	124	658	putative protein [Arabidopsis thaliana]
EMBL	CAA19866.1	0	373	480	2	109	putative protein [Arabidopsis thaliana]
RefSeq	NP_195109.2	0	8	539	34	564	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana]
RefSeq	NP_195110.3	0	8	540	33	565	glycosyl hydrolase family 10 protein [Arabidopsis thaliana]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1nq6_A	3e-25	202	481	15	298	A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8
PDB	1tux_A	3e-25	197	485	13	301	A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus
PDB	2bnj_A	1e-24	197	487	13	303	A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants
PDB	1gor_A	2e-24	197	487	13	303	A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants
PDB	1goq_A	2e-24	197	487	13	303	A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants

Hydropathy

EST Download unfiltered results here

Hit

Length

Start

End

EValue

DR353177

217

266

EX266128

278

215

490

GR454025

222

229

ES938997

196

202

GR150167

263

273

Orthologous Group
Species	ID
Aquilegia coerulea	Aquca_017_00095.4.344.628	Aquca_017_00095.3.344.628	Aquca_017_00095.2.564.848	Aquca_017_00095.1.577.861	Aquca_006_00211.1
	Aquca_003_00413.1	Aquca_011_00218.1.200.461	Aquca_011_00219.1.223.486	Aquca_006_00211.2
Arabidopsis lyrata	475392.571.844	489729.403.684	490628	913024.223.481	491296
	491295.221.480	353449	353450	480358
Arabidopsis thaliana	AT1G58370.1.570.844	AT4G08160.1.404.685	AT4G08160.2.404.657	AT4G38650.1	AT4G38300.1
	AT4G33830.1.222.485	AT4G33840.1.222.480	AT4G33860.1.222.480	AT4G33820.1	AT4G33810.1
	AT2G14690.1
Brachypodium distachyon	Bradi1g12710.1.410.670	Bradi2g02320.1.243.531	Bradi2g02330.1	Bradi1g27257.1.195.481	Bradi5g04640.1
	Bradi1g68310.1	Bradi3g24410.1	Bradi1g71040.1.232.494	Bradi1g71076.1	Bradi1g71050.1
Brassica rapa	Bra031698.712.996	Bra027867.572.849	Bra039768.635.918	Bra010733	Bra017609.315.575
	Bra034585.221.481	Bra034584.220.481	Bra034586	Bra036392	Bra017610
Carica papaya	evm.model.supercontig_160.18.423.706	evm.model.supercontig_160.19.570.841	evm.model.supercontig_37.165	evm.model.supercontig_106.45.230.491	evm.model.supercontig_169.45
	evm.model.supercontig_106.44
Capsella rubella	Carubv10008217m.613.898	Carubv10019737m.593.868	Carubv10000293m.404.688	Carubv10004489m	Carubv10004963m
	Carubv10006586m.221.480	Carubv10004408m	Carubv10015996m
Citrus clementina	Ciclev10000171m.611.880	Ciclev10030219m	Ciclev10028121m	Ciclev10030382m.227.489	Ciclev10028089m
Citrus sinensis	orange1.1g002447m.574.843	orange1.1g036715m	orange1.1g035723m	orange1.1g042396m	orange1.1g008838m
Cucumis sativus	Cucsa.353160.7.566.835	Cucsa.353160.4.599.868	Cucsa.353160.1.599.868	Cucsa.353160.8.341.611	Cucsa.143690.1.601.869
	Cucsa.169000.1	Cucsa.219120.1	Cucsa.298380.1
Eucalyptus grandis	Eucgr.F00109.1.537.816	Eucgr.F00108.3.544.819	Eucgr.F00108.2.583.858	Eucgr.F00108.1.587.862	Eucgr.F02205.1.452.713
	Eucgr.I01059.1	Eucgr.G01773.1	Eucgr.I01060.1	Eucgr.I01061.1	Eucgr.G01210.1
	Eucgr.G01205.1	Eucgr.G01215.1	Eucgr.G01214.1	Eucgr.G01217.1	Eucgr.G01206.1
	Eucgr.G01213.1	Eucgr.G01209.1
Fragaria vesca	mrna02649.1-v1.0-hybrid.593.860	mrna07626.1-v1.0-hybrid	mrna25505.1-v1.0-hybrid.713.976	mrna25505.1-v1.0-hybrid.713.976	mrna25505.1-v1.0-hybrid.713.976
	mrna28152.1-v1.0-hybrid.228.491	mrna25508.1-v1.0-hybrid.175.436	mrna25505.1-v1.0-hybrid.226.484	mrna25505.1-v1.0-hybrid.226.484	mrna25505.1-v1.0-hybrid.226.484
Glycine max	Glyma14g10456.2.555.825	Glyma14g10456.1.584.854	Glyma06g05290.1.396.666	Glyma04g05220.3.395.665	Glyma04g05220.2.395.665
	Glyma17g35060.2.585.853	Glyma17g35060.1.556.824	Glyma06g00680.1	Glyma04g00610.2	Glyma04g00610.1
	Glyma11g11220.1.211.472	Glyma11g11200.1.222.493	Glyma20g27040.1	Glyma10g40300.2	Glyma10g40300.1
	Glyma10g40293.1
Gossypium raimondii	Gorai.009G223500.6.425.707	Gorai.009G223500.5.565.847	Gorai.009G223500.4.564.846	Gorai.009G223500.3.565.847	Gorai.009G223500.2.564.846
	Gorai.009G223500.1.565.847	Gorai.009G223600.1.421.696	Gorai.010G029100.1.585.855	Gorai.005G231200.1	Gorai.008G020100.2
	Gorai.008G020100.1	Gorai.005G231100.2	Gorai.005G231100.1	Gorai.002G195600.1.359.528	Gorai.002G195600.1.359.528
	Gorai.002G195600.1.359.528	Gorai.002G195600.1.168.257	Gorai.002G195600.1.168.257	Gorai.002G195600.1.168.257	Gorai.002G195600.1.280.355
	Gorai.002G195600.1.280.355	Gorai.002G195600.1.280.355
Linum usitatissimum	Lus10007242.429.712	Lus10028242.428.711	Lus10025054	Lus10033786.213.477	Lus10014642.218.482
	Lus10020985.202.471	Lus10033784	Lus10034490	Lus10014646
Malus domestica	MDP0000225641.598.870	MDP0000246856	MDP0000249571	MDP0000245498.229.493	MDP0000144523
	MDP0000779011	MDP0000146624.768.905	MDP0000146624.768.905	MDP0000132261	MDP0000146624.669.763
	MDP0000146624.669.763
Manihot esculenta	cassava4.1_002200m.411.692	cassava4.1_001250m.571.847	cassava4.1_001252m.573.850	cassava4.1_001320m.557.841	cassava4.1_033386m
	cassava4.1_029937m	cassava4.1_021918m.217.482	cassava4.1_021990m	cassava4.1_028847m	cassava4.1_026436m
Medicago truncatula	Medtr3g117800.1	Medtr7g024420.1	Medtr1g106800.1	Medtr1g106790.1	Medtr1g106910.1
	Medtr1g106770.1
Mimulus guttatus	mgv1a027071m.549.820	mgv1a000981m.578.858	mgv1a020606m	mgv1a003597m.225.485	mgv1a023132m
	mgv1a024427m	mgv1a003542m	mgv1a019481m	mgv1a025021m	mgv1a022322m
	mgv1a004157m	mgv1a004760m	mgv1a021702m	mgv1a004887m
Oryza sativa	LOC_Os03g47010.1.411.694	LOC_Os01g04300.1.211.499	LOC_Os01g04290.1	LOC_Os05g25560.1	LOC_Os05g23350.1
	LOC_Os03g14010.3	LOC_Os03g14010.2	LOC_Os03g14010.1	LOC_Os05g23924.2	LOC_Os05g23924.1
	LOC_Os03g10469.2	LOC_Os03g10469.1	LOC_Os10g21110.1	LOC_Os03g10440.1.227.490	LOC_Os03g10478.1.232.497
	LOC_Os10g21100.1
Panicum virgatum	Pavirv00018091m.408.690	Pavirv00043679m.401.686	Pavirv00043214m	Pavirv00009472m.233.513	Pavirv00011920m
	Pavirv00064836m	Pavirv00011543m	Pavirv00004670m	Pavirv00012621m	Pavirv00003316m
	Pavirv00046655m	Pavirv00001379m	Pavirv00041480m	Pavirv00066390m	Pavirv00041724m
	Pavirv00066756m	Pavirv00064807m	Pavirv00011965m	Pavirv00070694m.721.846	Pavirv00049463m
	Pavirv00011967m	Pavirv00011966m	Pavirv00027101m.191.313	Pavirv00026745m.214.317
Physcomitrella patens	Pp1s121_107V6.1.717.999
Phaseolus vulgaris	Phvul.009G075400.1.397.677	Phvul.001G032300.2.556.827	Phvul.001G032300.1.583.854	Phvul.009G120500.1	Phvul.011G033100.1.217.499
	Phvul.007G045400.1	Phvul.007G045500.1	Phvul.007G045900.1
Picea abies	MA_9039435g0010.206.470	MA_350255g0010	MA_604666g0010	MA_10433351g0010	MA_9354042g0010
	MA_429144g0010.244.407	MA_8357324g0010
Populus trichocarpa	Potri.002G113100.2.412.693	Potri.004G173300.4	Potri.004G173300.3	Potri.004G173300.2	Potri.004G173300.1
	Potri.009G087900.1.202.466	Potri.009G087800.3	Potri.009G087800.2	Potri.009G087800.1	Potri.009G087700.2
	Potri.009G087700.1	Potri.009G087600.1
Prunus persica	ppa001089m.567.845	ppa004290m	ppa016947m	ppa021363m.219.483	ppa023031m
	ppa024827m
Ricinus communis	30170.m013644.481.758	30170.m013646	29492.m000070	29812.m000196	29812.m000195.218.483
	29812.m000194	29812.m000199	58888.m000026
Setaria italica	Si038956m.406.689	Si000821m	Si000630m.297.586	Si025026m	Si034995m.207.495
	Si001255m	Si034968m	Si039948m	Si034867m.230.491	Si039549m
	Si039641m	Si034912m.223.486
Selaginella moellendorffii	111304.535.794	420481.257.518
Sorghum bicolor	Sb01g012210.1.405.688	Sb03g006980.1.246.530	Sb03g006950.1.218.506	Sb04g020543.1	Sb01g041310.1
	Sb06g003350.1	Sb01g043760.1	Sb02g004490.1	Sb01g043730.1	Sb01g043720.1
Thellungiella halophila	Thhalv10023244m.581.848	Thhalv10028466m.388.667	Thhalv10024805m	Thhalv10027468m.221.481	Thhalv10024995m.219.458
	Thhalv10023172m
Vitis vinifera	GSVIVT01009272001.602.834	GSVIVT01024049001	GSVIVT01037833001.244.520	GSVIVT01037833001.244.520	GSVIVT01037832001
	GSVIVT01037825001.197.461
Volvox carteri	Vocar20000377m	Vocar20006952m
Zea mays	AC204711.3_FGT002

Orthologous Group

Species

Aquilegia coerulea

Aquca_017_00095.4.344.628

Aquca_017_00095.3.344.628

Aquca_017_00095.2.564.848

Aquca_017_00095.1.577.861

Aquca_006_00211.1

Aquca_003_00413.1

Aquca_011_00218.1.200.461

Aquca_011_00219.1.223.486

Aquca_006_00211.2