| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10006814m |
| Family | AA4 |
| Protein Properties | Length: 559 Molecular Weight: 61407.2 Isoelectric Point: 6.6291 |
| Chromosome | Chromosome/Scaffold: 7 Start: 1435024 End: 1438217 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA4 | 99 | 320 | 1e-22 |
| VSYFKEILGDRNVVEDEERLETANTDWMQKYKGSSKLMLLPKNTEEVSQILQYCDSRRLAVVPQGGNTGLVGGSVPVFDEVIINVGLMNKVLAFDEVSGV LVCEAGCILENLATFLDTKGFIMPLDLGAKGSCHIGGNVSTNAGGLRLIRYGSLHGTVLGLEAVTANGNVLDMLGTLRKDNTGYDLKHLFIGSEGSLGIV TKVSILTQPKLSSVNLAFIACK | |||
| Full Sequence |
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| Protein Sequence Length: 559 Download |
| MMMQKLRRSG ELIRYGSKSL INLRPNKDSL SRSVSGFVNH YETKGKHFES NVGNYNTELH 60 HGCLGRNLGM LQQYKCFGSS SASKIQRNPL FSSLDSKDVS YFKEILGDRN VVEDEERLET 120 ANTDWMQKYK GSSKLMLLPK NTEEVSQILQ YCDSRRLAVV PQGGNTGLVG GSVPVFDEVI 180 INVGLMNKVL AFDEVSGVLV CEAGCILENL ATFLDTKGFI MPLDLGAKGS CHIGGNVSTN 240 AGGLRLIRYG SLHGTVLGLE AVTANGNVLD MLGTLRKDNT GYDLKHLFIG SEGSLGIVTK 300 VSILTQPKLS SVNLAFIACK DYLSCQKLLV EAKRNLGEIL SAYEFLDNNS MDLVLNHLDG 360 VRNPVSSTEN FYILIETTGS DETNDREKLE AFLLKSLEKG LVSDGVIAQD INQASSFWRI 420 REGITEALQK AGAVYKYDLS LPVEEIYNIV NDLRGRLGDL ANVMGYGHLG DGNLHLNISA 480 AEYNDKLLGL IEPYVYEWTS KHRGSISAEH GLGVMKANEI FYSKTPETVA IMASIKKLLD 540 PKGILNPYKV LPHSLFSH* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02805 | PLN02805 | 2.0e-38 | 99 | 552 | 469 | + D-lactate dehydrogenase [cytochrome] | ||
| PRK11230 | PRK11230 | 4.0e-40 | 99 | 552 | 478 | + glycolate oxidase subunit GlcD; Provisional | ||
| pfam02913 | FAD-oxidase_C | 1.0e-63 | 308 | 550 | 251 | + FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold. | ||
| TIGR00387 | glcD | 4.0e-76 | 137 | 549 | 430 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 1.0e-106 | 101 | 553 | 464 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB16815.1 | 0 | 36 | 558 | 4 | 524 | actin interacting protein [Arabidopsis thaliana] |
| RefSeq | NP_568003.2 | 0 | 1 | 558 | 1 | 559 | FAD linked oxidase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002268002.1 | 0 | 56 | 557 | 54 | 550 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310828.1 | 0 | 30 | 558 | 11 | 529 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002521506.1 | 0 | 66 | 558 | 75 | 565 | d-lactate dehydrognease 2, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3pm9_F | 0 | 93 | 551 | 12 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 0 | 93 | 551 | 12 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_D | 0 | 93 | 551 | 12 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_C | 0 | 93 | 551 | 12 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_B | 0 | 93 | 551 | 12 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO838775 | 330 | 139 | 467 | 0 |
| GO839525 | 343 | 128 | 464 | 0 |
| CO071363 | 284 | 121 | 403 | 0 |
| FD574668 | 266 | 68 | 331 | 0 |
| CO071824 | 285 | 121 | 404 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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