Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10006920m |
Family | GH28 |
Protein Properties | Length: 400 Molecular Weight: 43605.5 Isoelectric Point: 8.2735 |
Chromosome | Chromosome/Scaffold: 7 Start: 3118128 End: 3120536 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 18 | 342 | 0 |
RGAASLVIHAKETYTLLPQFFEGPCVSRYIHIQIDGTIEAPRLVKDWGVQRNGCWLCFERVSGLVLNGSGVLNAHGESWWSSVELYSRPEAVRFSGCQNI FYNGLTQINSPKNHISISNCANSTLSNLHLIAPSGSPNTDGIDISLSYNIQILSSSIKTGDDCIGIGGNSYNINITYVTCGPGHGISIGSLGKGGATENV ENVNVRHCTFTKTQNGARIKTWPGGRGLVKNILFEDITLINVRSPIIIDQHYCNGGQCKQPGVGTAVKVNGVTYKYFKGTSLPDVAAIKLDCDRNTGCDN IYMEHINIASSWRRTPLASYCRFAH |
Full Sequence |
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Protein Sequence Length: 400 Download |
MAFQDAWRAL CRGRGRGRGA ASLVIHAKET YTLLPQFFEG PCVSRYIHIQ IDGTIEAPRL 60 VKDWGVQRNG CWLCFERVSG LVLNGSGVLN AHGESWWSSV ELYSRPEAVR FSGCQNIFYN 120 GLTQINSPKN HISISNCANS TLSNLHLIAP SGSPNTDGID ISLSYNIQIL SSSIKTGDDC 180 IGIGGNSYNI NITYVTCGPG HGISIGSLGK GGATENVENV NVRHCTFTKT QNGARIKTWP 240 GGRGLVKNIL FEDITLINVR SPIIIDQHYC NGGQCKQPGV GTAVKVNGVT YKYFKGTSLP 300 DVAAIKLDCD RNTGCDNIYM EHINIASSWR RTPLASYCRF AHLISRFVSI RINCANSYYV 360 NPQDPSLAPF AISPMPYAEP PALPAQSPAP IDHEIQNFY* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02218 | PLN02218 | 2.0e-64 | 2 | 325 | 333 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 1.0e-72 | 2 | 346 | 352 | + Probable polygalacturonase |
PLN03003 | PLN03003 | 6.0e-74 | 2 | 328 | 329 | + Probable polygalacturonase At3g15720 |
pfam00295 | Glyco_hydro_28 | 1.0e-80 | 20 | 325 | 311 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN03010 | PLN03010 | 2.0e-94 | 2 | 325 | 324 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_194963.2 | 0 | 2 | 269 | 53 | 322 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_194964.2 | 0 | 60 | 388 | 1 | 334 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 2 | 326 | 42 | 360 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_680757.1 | 0 | 1 | 388 | 4 | 388 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002266960.1 | 0 | 2 | 342 | 38 | 376 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 9e-20 | 88 | 290 | 79 | 289 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-20 | 88 | 290 | 79 | 289 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-20 | 88 | 290 | 79 | 289 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 9e-20 | 88 | 290 | 79 | 289 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 9e-20 | 88 | 290 | 79 | 289 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV536748 | 261 | 53 | 309 | 0 |
CV538127 | 225 | 22 | 242 | 0 |
EY474520 | 231 | 106 | 336 | 0 |
EV566469 | 273 | 35 | 299 | 0 |
GT141262 | 215 | 122 | 336 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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