y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10006945m |
Family | CBM43 |
Protein Properties | Length: 479 Molecular Weight: 53562.9 Isoelectric Point: 9.1183 |
Chromosome | Chromosome/Scaffold: 7 Start: 10855969 End: 10857579 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 389 | 472 | 1.3e-23 |
WCVPVDGANVSELEETLRTTCSRSNTTCAALAPGRECYEPVSVYWHASYAISSYWAQFRNQNVQCYFNGLAHETTTNPGNDRCK | |||
GH17 | 42 | 363 | 0 |
IGINYGRQGNNLPSPYQSINFIKSIKAGHVKLYDADPESLTLLSQTNLYVTITVPNHQITSLSSNQTIADEWVRTNIIPYYPQTQIRFVLVGHEILSYNY GNVSANLVPAMRKIVNSLRFHGIHNIKVGTPLAMDSLRSSFPPSNGTFREEVAGPVILPLLKFLNGTNSYFFINVHPYFRWSRNPMNTSLDYALFQGNST YTDPHTGLVYRNLLDQMLDSVLFAMTKLGYPHIRLAISETGWPNSGDIDETGANILNAATYNRNLIKKMTASPPIGTPSRPGLPIPTFVFSLFNENQKSG SGTQRHWGILHPDGIPIYDIDF |
Full Sequence |
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Protein Sequence Length: 479 Download |
MTLLAFFLFT LLVFSGSYCS ATPFQKHRYR QRKTMLDLAS KIGINYGRQG NNLPSPYQSI 60 NFIKSIKAGH VKLYDADPES LTLLSQTNLY VTITVPNHQI TSLSSNQTIA DEWVRTNIIP 120 YYPQTQIRFV LVGHEILSYN YGNVSANLVP AMRKIVNSLR FHGIHNIKVG TPLAMDSLRS 180 SFPPSNGTFR EEVAGPVILP LLKFLNGTNS YFFINVHPYF RWSRNPMNTS LDYALFQGNS 240 TYTDPHTGLV YRNLLDQMLD SVLFAMTKLG YPHIRLAISE TGWPNSGDID ETGANILNAA 300 TYNRNLIKKM TASPPIGTPS RPGLPIPTFV FSLFNENQKS GSGTQRHWGI LHPDGIPIYD 360 IDFTGQKPLT GFNPLPKPTN NVPYKGQVWC VPVDGANVSE LEETLRTTCS RSNTTCAALA 420 PGRECYEPVS VYWHASYAIS SYWAQFRNQN VQCYFNGLAH ETTTNPGNDR CKFPSVTL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.006 | 278 | 354 | 80 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-11 | 389 | 460 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-25 | 389 | 473 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 9.0e-140 | 42 | 363 | 323 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM64490.1 | 0 | 15 | 478 | 15 | 476 | beta-1,3-glucanase, putative [Arabidopsis thaliana] |
DDBJ | BAG16359.1 | 0 | 53 | 451 | 1 | 399 | tapetum-specific protein A6 family protein [Brassica oleracea var. italica] |
DDBJ | BAG16366.1 | 0 | 53 | 451 | 1 | 399 | tapetum-specific protein A6 family protein [Brassica rapa var. perviridis] |
EMBL | CAA49513.1 | 0 | 6 | 478 | 1 | 474 | beta-1,3-glucanase homologue [Brassica napus] |
RefSeq | NP_193144.1 | 0 | 1 | 478 | 1 | 478 | MEE48 (maternal effect embryo arrest 48); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 42 | 363 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 42 | 363 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 42 | 363 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghr_A | 0 | 42 | 363 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1aq0_B | 0 | 42 | 363 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |