| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10007197m |
| Family | PL4 |
| Protein Properties | Length: 682 Molecular Weight: 77675.5 Isoelectric Point: 9.6426 |
| Chromosome | Chromosome/Scaffold: 7 Start: 776927 End: 780747 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 59 | 663 | 0 |
| NQVVVDNGIIQVTFSCPRGLITGIKYNGFNNILNDQIENRGYWDVVWYELGHQPETDLLVGTKFDIVNQTSEHVEISFSRTWSVSQRGSVAPLNVDKRYI IRRGVSGVYMYAVLERLKGWPDVLMDQTRIVFKLNTTKFDVMAISDDRQKIMPFEADRNIRSGRASKLAYKEAVHLKNPQNHMLKGQVDDKYMYSMEDKD NKVHGWISSDQGVGFWMITPSNEFRGCGPVKQDLTSHLGPTTLSMFTSVHYVGKDMNTSYTSKEPWKKVFGPVFVYLNSASSRNLLWTDAKRQMVSEVQS WPYDFVKSVDYPLYHQRGTIKGQLFVKDRYNKIKANLFEEYAFVGLALPGEAGSWQTENKGYQFWTRADKTGMFTIANVRPGTYSLYAWVPGFIGDYKYE RDITITPGKEINIGPIVYEPPRNGQTLWEIGEPDRTAAEFYIPEPDPALFTKLSFNHSNPQDRFRQYGLWDRYSALYPRNDLVFIAGLSDYKKDWFYAHV NRKAGNGTYEATTWQIKFNLKAVTQTGNYTLRIALAAATTVNLMVQVNEADSKPIFMSGLIGRDNAIARHGIHGLYKLYNIDVNGKLLRVGNNTIFLTHG RNTTD | |||
| Full Sequence |
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| Protein Sequence Length: 682 Download |
| MEYGAPVMKA VRVMTKLFVL IFLLQSVHSR SSRVKLNIVD ERGQKFASPP VTLKKVGPNQ 60 VVVDNGIIQV TFSCPRGLIT GIKYNGFNNI LNDQIENRGY WDVVWYELGH QPETDLLVGT 120 KFDIVNQTSE HVEISFSRTW SVSQRGSVAP LNVDKRYIIR RGVSGVYMYA VLERLKGWPD 180 VLMDQTRIVF KLNTTKFDVM AISDDRQKIM PFEADRNIRS GRASKLAYKE AVHLKNPQNH 240 MLKGQVDDKY MYSMEDKDNK VHGWISSDQG VGFWMITPSN EFRGCGPVKQ DLTSHLGPTT 300 LSMFTSVHYV GKDMNTSYTS KEPWKKVFGP VFVYLNSASS RNLLWTDAKR QMVSEVQSWP 360 YDFVKSVDYP LYHQRGTIKG QLFVKDRYNK IKANLFEEYA FVGLALPGEA GSWQTENKGY 420 QFWTRADKTG MFTIANVRPG TYSLYAWVPG FIGDYKYERD ITITPGKEIN IGPIVYEPPR 480 NGQTLWEIGE PDRTAAEFYI PEPDPALFTK LSFNHSNPQD RFRQYGLWDR YSALYPRNDL 540 VFIAGLSDYK KDWFYAHVNR KAGNGTYEAT TWQIKFNLKA VTQTGNYTLR IALAAATTVN 600 LMVQVNEADS KPIFMSGLIG RDNAIARHGI HGLYKLYNID VNGKLLRVGN NTIFLTHGRN 660 TTDSFSGVMY DYLRLEGPSG V* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13620 | CarboxypepD_reg | 0.001 | 414 | 471 | 58 | + Carboxypeptidase regulatory-like domain. | ||
| cd10316 | RGL4_M | 1.0e-33 | 374 | 474 | 101 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 1.0e-45 | 486 | 676 | 193 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 2.0e-69 | 59 | 340 | 292 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 2.0e-88 | 45 | 246 | 204 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAS99719.1 | 0 | 1 | 678 | 1 | 674 | At2g22620 [Arabidopsis thaliana] |
| EMBL | CAA76417.1 | 0 | 246 | 681 | 1 | 435 | MYST1 [Arabidopsis thaliana] |
| RefSeq | NP_179847.1 | 0 | 1 | 678 | 1 | 674 | lyase [Arabidopsis thaliana] |
| RefSeq | NP_195508.2 | 0 | 1 | 681 | 1 | 678 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002527245.1 | 0 | 61 | 679 | 2 | 619 | lyase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nkg_A | 0.001 | 417 | 655 | 279 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
| PDB | 3njv_A | 0.001 | 417 | 655 | 279 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
| PDB | 2xhn_B | 0.001 | 417 | 655 | 279 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
| PDB | 2xhn_A | 0.001 | 417 | 655 | 279 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
| PDB | 3njx_A | 0.001 | 417 | 655 | 279 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
