PlantCAZyme

CAZyme Information

Basic Information
Species	Capsella rubella
Cazyme ID	Carubv10007228m
Family	AA6
Protein Properties	Length: 274 Molecular Weight: 28658.4 Isoelectric Point: 5.1141
Chromosome	Chromosome/Scaffold: 7 Start: 1311772 End: 1313432
Description	Quinone reductase family protein
View CDS

External Links
CAZyDB

Signature Domain Download full data set without filtering
Family	Start	End	Evalue
AA6	74	268	0
KIFVVFYSMYGHVESLAKRMKKGVDSVEGVEATLYRVPETLSQEVVDQMKAPVKDFEIPEITAAELAAADGFLFGFPTRYGCMAAQMKAFFDSTGSLWKE QSLAGKPAGFFVSTGTQGGGQETTAWTAITQLVHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAGDGSREATETELALAEHQGNYMAAIVK

Full Sequence
Protein Sequence Length: 274 Download
MGKGGGCVPS KKKKPSSLAT TGDGPGIDDN DATNNAPIQI EDDQTTVDGT ATNTAGTTTP 60 AITTASAKIS SPLKIFVVFY SMYGHVESLA KRMKKGVDSV EGVEATLYRV PETLSQEVVD 120 QMKAPVKDFE IPEITAAELA AADGFLFGFP TRYGCMAAQM KAFFDSTGSL WKEQSLAGKP 180 AGFFVSTGTQ GGGQETTAWT AITQLVHHGM LFVPIGYTFG AGMFKMDSIR GGSPYGAGVF 240 AGDGSREATE TELALAEHQG NYMAAIVKRL AQP* 300

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
pfam00258	Flavodoxin_1	9.0e-9	77	209	145	+ Flavodoxin.
pfam03358	FMN_red	7.0e-12	89	217	132	+ NADPH-dependent FMN reductase.
COG0655	WrbA	6.0e-29	73	270	205	+ Multimeric flavodoxin WrbA [General function prediction only]
TIGR01755	flav_wrbA	3.0e-51	74	270	198	+ NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected [Energy metabolism, Electron transport].
PRK03767	PRK03767	5.0e-61	74	271	199	+ NAD(P)H:quinone oxidoreductase; Provisional

Gene Ontology
GO Term	Description
GO:0009055	electron carrier activity
GO:0010181	FMN binding
GO:0016491	oxidoreductase activity
GO:0050662	coenzyme binding

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	AAM64959.1	0	1	273	1	273	minor allergen [Arabidopsis thaliana]
RefSeq	NP_195393.1	0	1	273	1	273	quinone reductase family protein [Arabidopsis thaliana]
RefSeq	XP_002310794.1	0	1	272	1	253	predicted protein [Populus trichocarpa]
RefSeq	XP_002327699.1	0	1	272	1	252	predicted protein [Populus trichocarpa]
RefSeq	XP_002525103.1	0	1	272	1	256	Minor allergen Alt a, putative [Ricinus communis]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	4dy4_C	0	74	270	2	195	A Chain A, High Resolution Structure Of E.coli Wrba With Fmn
PDB	4dy4_A	0	74	270	2	195	A Chain A, High Resolution Structure Of E.coli Wrba With Fmn
PDB	3b6m_B	0	74	270	3	196	A Chain A, High Resolution Structure Of E.coli Wrba With Fmn
PDB	3b6m_A	0	74	270	3	196	A Chain A, High Resolution Structure Of E.coli Wrba With Fmn
PDB	3b6k_B	0	74	270	3	196	A Chain A, High Resolution Structure Of E.coli Wrba With Fmn

Hydropathy

EST Download unfiltered results here

Hit

Length

Start

End

EValue

EX102627

275

274

EX109325

268

267

CK121153

243

240

EX131150

264

274

EX110128

247

246

Orthologous Group
Species	ID
Aquilegia coerulea	Aquca_010_00427.1	Aquca_028_00272.1	Aquca_028_00272.2	Aquca_045_00040.1	Aquca_028_00272.4
	Aquca_028_00272.3	Aquca_045_00041.1
Arabidopsis lyrata	912689	492071	495531	497377	496008
Arabidopsis thaliana	AT4G36750.1	AT4G27270.1	AT5G54500.1	AT5G58800.2	AT5G58800.1
	AT5G54500.2
Brachypodium distachyon	Bradi3g27210.2	Bradi2g51980.1	Bradi2g20710.2	Bradi1g59450.1	Bradi1g59440.1
	Bradi1g08640.1	Bradi2g20710.1
Brassica rapa	Bra017781	Bra029025	Bra022724	Bra002982	Bra020352
	Bra026364	Bra020939	Bra024671	Bra033447	Bra026424
	Bra015354	Bra026588	Bra028316	Bra013991
Carica papaya	evm.model.supercontig_62.114	evm.model.supercontig_12.2	evm.model.supercontig_27.163	evm.model.supercontig_112.39
Capsella rubella	Carubv10027151m	Carubv10027183m	Carubv10005724m	Carubv10027138m
Chlamydomonas reinhardtii	Cre10.g456000.t1.2	Cre10.g456050.t2.1	Cre10.g456050.t1.2	Cre10.g456100.t1.2	g11188.t1
Citrus clementina	Ciclev10026310m	Ciclev10029120m	Ciclev10009497m	Ciclev10009518m	Ciclev10016752m
	Ciclev10029300m	Ciclev10009723m	Ciclev10017062m	Ciclev10029304m
Citrus sinensis	orange1.1g024934m	orange1.1g040588m	orange1.1g029532m	orange1.1g028841m	orange1.1g029479m
	orange1.1g028847m	orange1.1g028917m	orange1.1g031039m	orange1.1g031827m	orange1.1g031823m
	orange1.1g031807m	orange1.1g031886m
Cucumis sativus	Cucsa.104940.1	Cucsa.109910.1	Cucsa.059590.1	Cucsa.045690.1	Cucsa.045690.2
	Cucsa.139160.1
Eucalyptus grandis	Eucgr.I01248.1	Eucgr.D00882.1	Eucgr.F03383.1	Eucgr.B02266.3	Eucgr.B02266.2
	Eucgr.B02266.1	Eucgr.B02266.4	Eucgr.I01248.2	Eucgr.I02466.1
Fragaria vesca	mrna29536.1-v1.0-hybrid	mrna02174.1-v1.0-hybrid	mrna03258.1-v1.0-hybrid	mrna30664.1-v1.0-hybrid	mrna07872.1-v1.0-hybrid
Glycine max	Glyma11g06920.1	Glyma01g38400.1	Glyma11g12790.1	Glyma12g04940.1	Glyma12g17680.1
	Glyma12g34500.2	Glyma12g34500.1	Glyma12g17680.2	Glyma13g35994.1	Glyma12g25950.1
	Glyma07g30750.1	Glyma08g06570.1	Glyma15g07040.2	Glyma15g07040.1	Glyma13g32300.1
	Glyma13g32300.2	Glyma14g37150.3	Glyma14g37150.2	Glyma14g37150.1	Glyma13g32310.1
	Glyma06g40750.2	Glyma06g40700.1	Glyma12g25950.2	Glyma06g40730.1	Glyma08g06570.2
	Glyma06g39970.1	Glyma19g02750.2	Glyma04g13531.1	Glyma06g40810.2	Glyma12g23000.2
	Glyma14g22010.1	Glyma11g33050.2
Gossypium raimondii	Gorai.003G016700.1	Gorai.005G228800.3	Gorai.005G228800.2	Gorai.005G228800.1	Gorai.007G206100.3
	Gorai.007G206100.1	Gorai.008G069000.1	Gorai.009G429200.1	Gorai.002G079100.1	Gorai.011G020200.1
	Gorai.003G123300.6	Gorai.003G123300.5	Gorai.003G123300.4	Gorai.003G123300.2	Gorai.003G123300.1
	Gorai.003G123300.7	Gorai.003G123300.8	Gorai.009G429200.2	Gorai.002G079100.2	Gorai.003G123300.9
	Gorai.007G206100.2	Gorai.003G123300.3
Linum usitatissimum	Lus10014325	Lus10026035	Lus10041718	Lus10040486	Lus10018401
	Lus10007612	Lus10006748	Lus10020076	Lus10005862	Lus10024032
Malus domestica	MDP0000404722	MDP0000301453	MDP0000896493	MDP0000393227	MDP0000509613
	MDP0000829416	MDP0000295439	MDP0000181421.64.175	MDP0000181421.64.175	MDP0000181421.214.283
	MDP0000181421.214.283	MDP0000667053
Manihot esculenta	cassava4.1_013993m	cassava4.1_015848m	cassava4.1_016492m	cassava4.1_016498m	cassava4.1_016478m
	cassava4.1_030159m	cassava4.1_016500m
Medicago truncatula	Medtr5g019620.1	Medtr2g081810.1	Medtr5g070030.1	Medtr2g011080.1	Medtr2g011080.2
Mimulus guttatus	mgv1a011919m	mgv1a026744m	mgv1a014007m	mgv1a013996m	mgv1a014020m
	mgv1a013995m
Oryza sativa	LOC_Os01g57570.1	LOC_Os05g42190.1	LOC_Os08g04460.1	LOC_Os03g53730.1	LOC_Os01g57570.2
	LOC_Os08g04460.2
Panicum virgatum	Pavirv00064613m	Pavirv00046437m	Pavirv00014837m	Pavirv00023949m	Pavirv00031126m
	Pavirv00039933m	Pavirv00036713m	Pavirv00019037m
Physcomitrella patens	Pp1s475_5V6.5	Pp1s475_5V6.4	Pp1s475_5V6.3	Pp1s475_5V6.2	Pp1s475_5V6.1
	Pp1s32_160V6.1	Pp1s55_98V6.1	Pp1s352_29V6.1	Pp1s227_23V6.1	Pp1s114_114V6.1
	Pp1s270_78V6.1
Phaseolus vulgaris	Phvul.002G027100.1	Phvul.011G047200.1	Phvul.011G152500.1	Phvul.005G088900.1	Phvul.005G088900.2
	Phvul.006G194800.1	Phvul.002G219700.1	Phvul.006G194900.1	Phvul.008G262200.1	Phvul.011G152900.1
	Phvul.005G088900.3	Phvul.011G152800.1	Phvul.011G153100.1
Picea abies	MA_125690g0020	MA_10426786g0010	MA_10434600g0010	MA_206492g0010	MA_159008g0220
	MA_28841g0010	MA_479276g0010
Populus trichocarpa	Potri.007G029600.1	Potri.005G126200.1	Potri.004G151100.1	Potri.001G410700.1	Potri.011G129400.2
	Potri.011G129400.1	Potri.004G028900.1	Potri.011G033100.1	Potri.009G044400.7	Potri.009G044400.6
	Potri.009G044400.5	Potri.009G044400.1	Potri.009G044400.4	Potri.009G044400.2	Potri.011G033100.2
	Potri.009G044400.3
Prunus persica	ppa011578m	ppa010049m	ppa011617m	ppa011600m	ppa011625m
	ppa011865m
Ricinus communis	29646.m001065	29851.m002441	27733.m000032	29842.m003705	29681.m001326
Setaria italica	Si037123m	Si023271m	Si015648m	Si002660m	Si031096m
Selaginella moellendorffii	229897	232063
Sorghum bicolor	Sb01g021290.2	Sb01g021290.1	Sb03g036660.1	Sb02g000630.1	Sb09g024730.2
	Sb09g024730.1	Sb02g006210.1	Sb03g036660.2	Sb04g023400.1
Thellungiella halophila	Thhalv10025964m	Thhalv10014706m	Thhalv10026307m	Thhalv10014693m	Thhalv10014690m
	Thhalv10014688m
Vitis vinifera	GSVIVT01031920001	GSVIVT01014540001	GSVIVT01005305001	GSVIVT01019014001	GSVIVT01005278001
	GSVIVT01005303001	GSVIVT01024768001
Volvox carteri	Vocar20014747m	Vocar20014778m

Orthologous Group

Species

Aquilegia coerulea

Arabidopsis lyrata

912689