| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10007331m |
| Family | AA7 |
| Protein Properties | Length: 556 Molecular Weight: 61985 Isoelectric Point: 8.7527 |
| Chromosome | Chromosome/Scaffold: 7 Start: 7748619 End: 7750757 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 77 | 534 | 0 |
| NARFNTSSTPKPTIIVTPLSDSHVSAAVVCSNSLNFLLKIRSGGHDYEGLSYISDKPFFILDMSNLRDVSVDIAAQSAWISAGATLGEVYYGIWEKSKVH GFPAGVCPTVGVGGHISGAGYGNMVRKFGLSVDYVEDAKIVDVKGQILDRKAMGEDLFWAICGGGGASFGVVLGYKVKLVPVPETVTVFRVEQYMDSGAV DMVYKWQSVGPKTDPNLFMRMLIQPVTRKKVKTVRATVVALFLGRADEVVALLAKEFPELGLKKEVCEEMTWIQSALWWDNDENATQTDPKVFLDRNLDT ASFGKRKSDYVASEMPRDGIESLFKKMIELGKIGLVFNPYGGKMAEVAVNATPFPHRNNLFKIQYSVNWKENSASIEKGFLNQAKVLYSFMTGFVSKNPR SAYLNYRDVDIGVNDHGTNSYKEGEVYGRKYFGENFDRLVKIKTTVDPDNFFRNEQSI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 556 Download |
| MMIKGQTFVS VLLFVIFLVS IPFSTTFAAP PSSDSIYESF VQCFSDKTKS PQSQITDNVF 60 SQTNPAFSSV LRAYIRNARF NTSSTPKPTI IVTPLSDSHV SAAVVCSNSL NFLLKIRSGG 120 HDYEGLSYIS DKPFFILDMS NLRDVSVDIA AQSAWISAGA TLGEVYYGIW EKSKVHGFPA 180 GVCPTVGVGG HISGAGYGNM VRKFGLSVDY VEDAKIVDVK GQILDRKAMG EDLFWAICGG 240 GGASFGVVLG YKVKLVPVPE TVTVFRVEQY MDSGAVDMVY KWQSVGPKTD PNLFMRMLIQ 300 PVTRKKVKTV RATVVALFLG RADEVVALLA KEFPELGLKK EVCEEMTWIQ SALWWDNDEN 360 ATQTDPKVFL DRNLDTASFG KRKSDYVASE MPRDGIESLF KKMIELGKIG LVFNPYGGKM 420 AEVAVNATPF PHRNNLFKIQ YSVNWKENSA SIEKGFLNQA KVLYSFMTGF VSKNPRSAYL 480 NYRDVDIGVN DHGTNSYKEG EVYGRKYFGE NFDRLVKIKT TVDPDNFFRN EQSIPTLPNR 540 FVYQLHVFTD FRFRF* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 7.0e-16 | 69 | 537 | 492 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam08031 | BBE | 6.0e-18 | 478 | 535 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| pfam01565 | FAD_binding_4 | 2.0e-24 | 88 | 225 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_171700.1 | 0 | 9 | 540 | 3 | 537 | ATSEC1A; FAD binding / catalytic/ electron carrier/ oxidoreductase [Arabidopsis thaliana] |
| RefSeq | NP_172642.3 | 0 | 9 | 540 | 1 | 532 | FAD binding / catalytic/ electron carrier/ oxidoreductase [Arabidopsis thaliana] |
| RefSeq | NP_193815.2 | 0 | 33 | 539 | 32 | 538 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_193816.1 | 0 | 36 | 537 | 34 | 535 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_974580.1 | 0 | 33 | 540 | 32 | 539 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dns_B | 0 | 28 | 537 | 1 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 28 | 537 | 1 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3vte_A | 0 | 38 | 538 | 5 | 514 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 3tsj_B | 0 | 59 | 541 | 24 | 500 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 3tsj_A | 0 | 59 | 541 | 24 | 500 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
