Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10007643m |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 42659.2 Isoelectric Point: 7.3725 |
Chromosome | Chromosome/Scaffold: 7 Start: 1739629 End: 1741817 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 378 | 0 |
RGDGDIKTLLIPSDKTFLLQPTVFQGPCKSSSIKVQLDGVIVAPSDKGSWPNPTSKMWIKFSYVYGLIIVGSGTINGRGSSFWELKLKASQRPTALHISN CDNLRINGITSIDSAKNHLSINKCNTVAISKINLFAPETSPNTDGIDISDSTNINIFDSTIQTGDDCIAINSGTSNINITGINCGPGHGISVGSLGAGGA EATVSNVQVSHCTFNQTANGARIKTWLGGQGYARNISFTDITLINTKNPIIIDQQYIDKRHLAAEESAVAISNVKYVGFRGTTSNKNAITLKCSETTHCR DVVMDGIDITLADGGKPKVDCQNVDGK |
Full Sequence |
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Protein Sequence Length: 397 Download |
METTLRIWIL ISFLYFVLVN GQNYNVLNFG AKGDGQTDDS KVFVQAWNAI CRGDGDIKTL 60 LIPSDKTFLL QPTVFQGPCK SSSIKVQLDG VIVAPSDKGS WPNPTSKMWI KFSYVYGLII 120 VGSGTINGRG SSFWELKLKA SQRPTALHIS NCDNLRINGI TSIDSAKNHL SINKCNTVAI 180 SKINLFAPET SPNTDGIDIS DSTNINIFDS TIQTGDDCIA INSGTSNINI TGINCGPGHG 240 ISVGSLGAGG AEATVSNVQV SHCTFNQTAN GARIKTWLGG QGYARNISFT DITLINTKNP 300 IIIDQQYIDK RHLAAEESAV AISNVKYVGF RGTTSNKNAI TLKCSETTHC RDVVMDGIDI 360 TLADGGKPKV DCQNVDGKSS DIDLMRDCFK HSTSFN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-86 | 5 | 378 | 398 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 5.0e-89 | 53 | 375 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 5.0e-99 | 26 | 395 | 377 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-115 | 6 | 380 | 383 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 0 | 1 | 395 | 396 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC79138.1 | 0 | 1 | 390 | 1 | 380 | putative polygalacturonase [Arabidopsis thaliana] |
EMBL | CAA20037.1 | 0 | 11 | 394 | 1 | 373 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 1 | 394 | 1 | 393 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_198105.2 | 0 | 2 | 394 | 31 | 414 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_199297.1 | 0 | 1 | 390 | 1 | 380 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-26 | 126 | 375 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-26 | 126 | 375 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-26 | 126 | 375 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-26 | 126 | 375 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-26 | 126 | 375 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |