Basic Information | |
---|---|
Species | Capsella rubella |
Cazyme ID | Carubv10007695m |
Family | GH28 |
Protein Properties | Length: 404 Molecular Weight: 43527 Isoelectric Point: 8.6429 |
Chromosome | Chromosome/Scaffold: 7 Start: 14543218 End: 14544697 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 58 | 389 | 0 |
WDAACGSTDAAVIYVPKGRYLVSPVRFIGVGCKSLNIVFRIDGTLVGSEDYMFLGKEANWLSFERVSGVSIIGGSLDAKGPSLWSCKASSSNNNCPVGAT TMSFVESSRIKVKGLLSLNSQMFHIVINRCRDVKLDDIRIVADGKSPNTDGIHVQLSTDVEIRNASIKTGDDCISIGPGAKNLWVEGITCGPGHGISIGS LGKDREEEGVQNVTVKKTVFVGTDNGLRIKSWANPTSGFVQRVRFLDSLMFNVKFPIIIDQHYCPHNINCPSEESGVKINDVIYQGIRGTSATKVAVKLD CSSKTPCTRIIMKDINLKYANEAAQSSCNNVL |
Full Sequence |
---|
Protein Sequence Length: 404 Download |
MERSVQRTNL QHVCILSTLT IFLSLSRPTH ATKQLNVLSF GAKTNGIVDS ALAFLKAWDA 60 ACGSTDAAVI YVPKGRYLVS PVRFIGVGCK SLNIVFRIDG TLVGSEDYMF LGKEANWLSF 120 ERVSGVSIIG GSLDAKGPSL WSCKASSSNN NCPVGATTMS FVESSRIKVK GLLSLNSQMF 180 HIVINRCRDV KLDDIRIVAD GKSPNTDGIH VQLSTDVEIR NASIKTGDDC ISIGPGAKNL 240 WVEGITCGPG HGISIGSLGK DREEEGVQNV TVKKTVFVGT DNGLRIKSWA NPTSGFVQRV 300 RFLDSLMFNV KFPIIIDQHY CPHNINCPSE ESGVKINDVI YQGIRGTSAT KVAVKLDCSS 360 KTPCTRIIMK DINLKYANEA AQSSCNNVLG DSTLGLVKPQ ACF* |
Functional Domains Download unfiltered results here | ||||||
---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02218 | PLN02218 | 1.0e-79 | 31 | 387 | 363 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 1.0e-83 | 33 | 403 | 379 | + Probable polygalacturonase |
pfam00295 | Glyco_hydro_28 | 3.0e-84 | 62 | 388 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02188 | PLN02188 | 7.0e-102 | 30 | 388 | 364 | + polygalacturonase/glycoside hydrolase family protein |
PLN02155 | PLN02155 | 1.0e-124 | 31 | 403 | 374 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK28449.1 | 0 | 31 | 403 | 27 | 397 | unknown [Arabidopsis thaliana] |
RefSeq | NP_176735.1 | 0 | 31 | 403 | 27 | 397 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002262690.1 | 0 | 29 | 403 | 26 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 36 | 403 | 33 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 16 | 403 | 4 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 8e-19 | 60 | 320 | 1 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 8e-19 | 60 | 320 | 1 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 8e-19 | 60 | 320 | 1 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 8e-19 | 60 | 320 | 1 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 8e-19 | 60 | 320 | 1 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |