| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10007797m |
| Family | AA7 |
| Protein Properties | Length: 526 Molecular Weight: 59429.7 Isoelectric Point: 7.3097 |
| Chromosome | Chromosome/Scaffold: 7 Start: 7730131 End: 7731708 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 68 | 521 | 0 |
| NMNFASLKPILIVKPKSESEIKNAILCSRKLGVQVRTMSGGHDYEGLSYLAQSPFIIIDLVNLRSIKINLTDETAWIQSGATLGELYYEIAKTSKVHAFA AGVCPSVGVGGHISGGGFGTIMRKHGLASDNVVDARLMDVNGRILDRKTMGEDLFWALRGGGAASFGVVLSWKVKLARVPEKVTCFISQHPMGPSMNKLV HRWQSIGSELDEDLFIRVIIDNSQEGNQRTVKTTFQTLFLGGIDRLIPLMNQKFPELGLRSQDCKEMSWIESIMFFNWRSGQPLEIMLNRDLRFEDTYFK AKSDFVQTPVPENVFEEVTKRFLEKETPLMILEPLGGKINEISETASPYPHRRGNLYNIQYMVKWKVNEIEEMNKHVRWMRSLHDYMTPYVSKSPRGAYL NYRDLDLGTTEGTNTSFEDARKWGETYFKGNFKRLGLVKGKIDPTNFFKNEQSI | |||
| Full Sequence |
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| Protein Sequence Length: 526 Download |
| MSNQGFGDSD EFTNYSPPTR EEFQSCCLST SHCDSTSQNP INLTTHTPDS RTYTNFPESS 60 SPDSSFINMN FASLKPILIV KPKSESEIKN AILCSRKLGV QVRTMSGGHD YEGLSYLAQS 120 PFIIIDLVNL RSIKINLTDE TAWIQSGATL GELYYEIAKT SKVHAFAAGV CPSVGVGGHI 180 SGGGFGTIMR KHGLASDNVV DARLMDVNGR ILDRKTMGED LFWALRGGGA ASFGVVLSWK 240 VKLARVPEKV TCFISQHPMG PSMNKLVHRW QSIGSELDED LFIRVIIDNS QEGNQRTVKT 300 TFQTLFLGGI DRLIPLMNQK FPELGLRSQD CKEMSWIESI MFFNWRSGQP LEIMLNRDLR 360 FEDTYFKAKS DFVQTPVPEN VFEEVTKRFL EKETPLMILE PLGGKINEIS ETASPYPHRR 420 GNLYNIQYMV KWKVNEIEEM NKHVRWMRSL HDYMTPYVSK SPRGAYLNYR DLDLGTTEGT 480 NTSFEDARKW GETYFKGNFK RLGLVKGKID PTNFFKNEQS IPPLF* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 2.0e-12 | 76 | 248 | 184 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam08031 | BBE | 7.0e-17 | 465 | 522 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| pfam01565 | FAD_binding_4 | 9.0e-19 | 76 | 213 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK56258.1 | 0 | 15 | 525 | 21 | 530 | AF367269_1 AT4g20860/T13K14_20 [Arabidopsis thaliana] |
| GenBank | AAN60251.1 | 0 | 15 | 448 | 19 | 451 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_193818.1 | 0 | 15 | 525 | 21 | 530 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_199249.1 | 0 | 20 | 524 | 30 | 530 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | XP_002523167.1 | 0 | 27 | 522 | 29 | 522 | Reticuline oxidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 20 | 524 | 4 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 43 | 525 | 17 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 43 | 525 | 17 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 17 | 525 | 5 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 17 | 525 | 5 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX137437 | 303 | 80 | 382 | 0 |
| BX835362 | 266 | 256 | 521 | 0 |
| HO777438 | 527 | 12 | 524 | 0 |
| GT085426 | 306 | 187 | 491 | 0 |
| ES911178 | 232 | 295 | 526 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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