| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10007804m |
| Family | PL1 |
| Protein Properties | Length: 394 Molecular Weight: 43393.3 Isoelectric Point: 8.6359 |
| Chromosome | Chromosome/Scaffold: 7 Start: 7211508 End: 7213021 |
| Description | root hair specific 14 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 115 | 314 | 0 |
| ITFAKDMVITLENELMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDCKPGKYGMVRSSTTHVGHRKGSDGDAIAIFSSSNIWIDHCYLARC TDGLIDVIHASTGITISNNYFTQHDKVMLLGHNDDFVKDVNMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSEGNYFIAS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 394 Download |
| MTLFTISCLV VALFLCQSLV HALNNGYYGY TPTVANYLPE KPQNVMNPVD ACWRLKSDWA 60 ANRKDLADCV VGFGSSNVGG KKGNIYVVTN SYDNAQNPQP GSLRYGVIQD KPLWITFAKD 120 MVITLENELM VNSYKTIDGR GAKVEIAYGP CITIQDVTNV IVHGISIHDC KPGKYGMVRS 180 STTHVGHRKG SDGDAIAIFS SSNIWIDHCY LARCTDGLID VIHASTGITI SNNYFTQHDK 240 VMLLGHNDDF VKDVNMKVTV AFNHFGPGLV ERMPRVRRGY AHVANNRYDK WIMYAIGGSA 300 DPTIFSEGNY FIASDKSNSK EVTKREVKGG WNNWRWRTSK DVFKNGAYFV PSGYGSIGLP 360 YSSAQQFTVA PGNLVPSLTA DAGPLNCNRN RPC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-27 | 71 | 311 | 262 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-61 | 128 | 311 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 7.0e-77 | 120 | 315 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172656.1 | 0 | 3 | 393 | 5 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_193939.1 | 0 | 1 | 393 | 1 | 393 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_193940.1 | 0 | 1 | 393 | 1 | 393 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263615.1 | 0 | 30 | 393 | 29 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002518442.1 | 0 | 30 | 393 | 28 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 47 | 383 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 47 | 383 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-16 | 66 | 313 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 3e-16 | 139 | 311 | 140 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.000000000002 | 126 | 315 | 73 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
