Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10007828m |
Family | GH28 |
Protein Properties | Length: 432 Molecular Weight: 47199.6 Isoelectric Point: 7.6584 |
Chromosome | Chromosome/Scaffold: 7 Start: 3125155 End: 3127624 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 60 | 379 | 0 |
ASSNGSALVIEKKETYTLQPQLFEGPCVSSDVHIQIDGKIKAPAKPRDWENSERQCWLCFKDIVGLVLNGSGVLLPHGEAWWPSVRHSKRPTTISFDTCH GIVYNGLTQMNSPKNHISVVGCKNVTLSNLNISAPHDSPNTDGINICESHNIHVLDSSIQTGDDCVAITGGKGGSSDINITRVACGPGHGISIGSLGKDE TDDIVENVNVKSCSFSGTQNGARIKTWHGGQGSARNILYEHITLVNASFPIIIDQNYTDSRLKGNAVRVDNVKFRHFKGTSASKIAIKLNCENCHNIVME HINITSSSPDTKLKAYCRFA |
Full Sequence |
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Protein Sequence Length: 432 Download |
MKDLMKTLFS VMIIVLLYYM GYGEGRRILS MKDFIASDHT NVDYSQAMQK AWKELCKDQA 60 SSNGSALVIE KKETYTLQPQ LFEGPCVSSD VHIQIDGKIK APAKPRDWEN SERQCWLCFK 120 DIVGLVLNGS GVLLPHGEAW WPSVRHSKRP TTISFDTCHG IVYNGLTQMN SPKNHISVVG 180 CKNVTLSNLN ISAPHDSPNT DGINICESHN IHVLDSSIQT GDDCVAITGG KGGSSDINIT 240 RVACGPGHGI SIGSLGKDET DDIVENVNVK SCSFSGTQNG ARIKTWHGGQ GSARNILYEH 300 ITLVNASFPI IIDQNYTDSR LKGNAVRVDN VKFRHFKGTS ASKIAIKLNC ENCHNIVMEH 360 INITSSSPDT KLKAYCRFAD VRTSFVNIDV KCNACKYHQP PALSPEQPPA LSPDQPPALS 420 PDQPPALSRL P* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 9.0e-73 | 29 | 381 | 369 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-74 | 62 | 373 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 2.0e-78 | 43 | 382 | 349 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 1.0e-79 | 26 | 376 | 365 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 3.0e-97 | 5 | 384 | 389 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_194963.2 | 0 | 1 | 322 | 8 | 328 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_194964.2 | 0 | 107 | 430 | 4 | 339 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 5 | 392 | 1 | 387 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_680757.1 | 0 | 47 | 425 | 5 | 388 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 4 | 392 | 1 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-19 | 81 | 367 | 52 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 1e-18 | 137 | 375 | 111 | 356 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 1e-18 | 137 | 375 | 111 | 356 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1hg8_A | 3e-18 | 199 | 342 | 165 | 307 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 4e-18 | 120 | 316 | 68 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |