| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10007831m |
| Family | PL4 |
| Protein Properties | Length: 653 Molecular Weight: 74159.5 Isoelectric Point: 4.9104 |
| Chromosome | Chromosome/Scaffold: 7 Start: 6192301 End: 6195346 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 6 | 624 | 0 |
| SVQLDVQENHVVIGNGIVEVTISKPDGFVTGVSYQGVDNLLEIRNEDYNRGYWDLVWSEEGAPGTTGKSERIKGTSFEVVVENEELVEISFSRKWDSSLK DSIAPINVDKRFIMRKNVTGFYSYAIFEHLAEWPAFNLPQTRIVYKLRKDKFQYMAIADNRQRKMPLPEDRLGKRGRPLAFPEAVLLVHPVEEEFKGEVD DKYQYSCENKDLKVHGWISHNLKLGCWQIIPSNEFRSGGLSKQNLTSHVGPISLAMFLSAHYAGEDMVMKVKAGESWKKVFGPVFTYLNCLPDKTSDPLS LWEDAKNQMLTEVQSWPYDFPASEDFAVSDKRGCISGRLLVYDKYLSDELLPANGAFVGLAPPGEVGSWQLESKGYQFWTEADVDGYFTINNVREGEYNL NAYVTGCIGDYQYEQSINITAGCSIDVGNIVYEPPRDGPTVWEIGVPDRSAAEFFVPDPNPKYINKLYIGHPDRFRQYGLWERYTELYPKEDLVFTIGVS DYKKDWFFAHVTRKLEDDTYQKTTWQIKFKLEKVQNNNSTYKIRIALATANVAELQVRVNEEFSDKSTPMFTTGVIGHDNAIARHGIRGIYRLYNVDVPS EKLIEGDNTLFLTQAMTTG | |||
| Full Sequence |
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| Protein Sequence Length: 653 Download |
| MSNQDSVQLD VQENHVVIGN GIVEVTISKP DGFVTGVSYQ GVDNLLEIRN EDYNRGYWDL 60 VWSEEGAPGT TGKSERIKGT SFEVVVENEE LVEISFSRKW DSSLKDSIAP INVDKRFIMR 120 KNVTGFYSYA IFEHLAEWPA FNLPQTRIVY KLRKDKFQYM AIADNRQRKM PLPEDRLGKR 180 GRPLAFPEAV LLVHPVEEEF KGEVDDKYQY SCENKDLKVH GWISHNLKLG CWQIIPSNEF 240 RSGGLSKQNL TSHVGPISLA MFLSAHYAGE DMVMKVKAGE SWKKVFGPVF TYLNCLPDKT 300 SDPLSLWEDA KNQMLTEVQS WPYDFPASED FAVSDKRGCI SGRLLVYDKY LSDELLPANG 360 AFVGLAPPGE VGSWQLESKG YQFWTEADVD GYFTINNVRE GEYNLNAYVT GCIGDYQYEQ 420 SINITAGCSI DVGNIVYEPP RDGPTVWEIG VPDRSAAEFF VPDPNPKYIN KLYIGHPDRF 480 RQYGLWERYT ELYPKEDLVF TIGVSDYKKD WFFAHVTRKL EDDTYQKTTW QIKFKLEKVQ 540 NNNSTYKIRI ALATANVAEL QVRVNEEFSD KSTPMFTTGV IGHDNAIARH GIRGIYRLYN 600 VDVPSEKLIE GDNTLFLTQA MTTGSGAFTG LNGLMYDYIR LEAPPLDSNS HL* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 2.0e-32 | 336 | 435 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 8.0e-49 | 447 | 642 | 198 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 1.0e-70 | 14 | 295 | 285 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 4.0e-90 | 3 | 204 | 202 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL15345.1 | 0 | 160 | 651 | 1 | 487 | AT4g24430/T22A6_260 [Arabidopsis thaliana] |
| GenBank | AAU90065.1 | 0 | 160 | 651 | 1 | 487 | At4g24430 [Arabidopsis thaliana] |
| RefSeq | NP_567703.4 | 0 | 1 | 651 | 1 | 646 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002527353.1 | 0 | 7 | 645 | 6 | 634 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527357.1 | 0 | 7 | 645 | 6 | 635 | lyase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3njx_A | 0.01 | 382 | 617 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CD813831 | 254 | 2 | 255 | 0 |
| FD941014 | 261 | 388 | 648 | 0 |
| DY293973 | 328 | 7 | 332 | 0 |
| GW864372 | 312 | 148 | 459 | 0 |
| FY792769 | 272 | 338 | 609 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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