Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10007965m |
Family | CE8 |
Protein Properties | Length: 331 Molecular Weight: 36803.8 Isoelectric Point: 8.5287 |
Chromosome | Chromosome/Scaffold: 132 Start: 9418 End: 11237 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 44 | 326 | 0 |
HGCGRFTRIQNAIDASLGSTLTKQLILIDHGIYRERVIVPKNKKNLVMQGMGLSRTSIEWNNTASSSNGTYESFSVALYGDLFTAKNISFKNTSPAPNPG AVREQAVALKVVGDKTAFYGCGFFGNQDTLLDQEGRHYFKDCFIEGSIDFIFGNGRSLYEDCIIHSVAKENTVGCITANGKDTLRERTGFSFVNCKIGGS AKVWLGRAWRPYARVVFSKTYMSQVVSYEGWNDMKDHKTQKTVYFGEHRCYGPGANHSGRVPYAQQLTDVEAAPFTNISFIDG |
Full Sequence |
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Protein Sequence Length: 331 Download |
MLFLIVFLSI IAPTQLDRTP KCDAEFLNFP TKGYTLVYKV SSLHGCGRFT RIQNAIDASL 60 GSTLTKQLIL IDHGIYRERV IVPKNKKNLV MQGMGLSRTS IEWNNTASSS NGTYESFSVA 120 LYGDLFTAKN ISFKNTSPAP NPGAVREQAV ALKVVGDKTA FYGCGFFGNQ DTLLDQEGRH 180 YFKDCFIEGS IDFIFGNGRS LYEDCIIHSV AKENTVGCIT ANGKDTLRER TGFSFVNCKI 240 GGSAKVWLGR AWRPYARVVF SKTYMSQVVS YEGWNDMKDH KTQKTVYFGE HRCYGPGANH 300 SGRVPYAQQL TDVEAAPFTN ISFIDGEEWL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 1.0e-93 | 45 | 330 | 286 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 7.0e-97 | 42 | 330 | 291 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 2.0e-98 | 40 | 330 | 299 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-123 | 29 | 330 | 308 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 6.0e-133 | 44 | 330 | 293 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO22722.1 | 0 | 35 | 330 | 88 | 385 | putative pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_181208.1 | 0 | 1 | 330 | 1 | 333 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_181209.1 | 0 | 35 | 330 | 88 | 385 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002264941.1 | 0 | 43 | 330 | 19 | 309 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002326223.1 | 0 | 38 | 330 | 13 | 313 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 40 | 330 | 10 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.99993e-41 | 40 | 330 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 7e-22 | 34 | 319 | 4 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 7e-22 | 34 | 319 | 4 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 7e-22 | 34 | 319 | 4 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |